LOC103038083


Basic Information

Item Value
gene id LOC103038083
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 25243231 ~ 25268739 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673816.1
CTGCAGCTCTCAGCTCATTAAAAACTCTGGAGATTCTCTTGGCTGGAAATGTTTAAACCCAACTGACCATGGACAGATTACTTCTAATACTCTGAAGTGAAACTTGGGGAGGATCTGATGTGTTTAAAGGAGATACATTATCACTCCAGAGCAAATAAAACCAAGCAGAGGAGCTTACAATGGAGCTGCTGATCCGCAACAGCGCTTTCTGCTTACTtgtgctgtgggtgagtgtgagtgtgtgtgattgtgaggtTCTCATGTATGGGCACGTTCAATCTCCACTGTATCCTAAGCCCTATCCAGCTGATCTCAATAAACAGTGGATCCTGGAAGTTCCTCACGGTTACAGAATCAAGCTCACCTTCACCTACCTGGACATTGAGCATTCTGCTAACTGCTACTATGACTCTCTAAAGGTTTTGGATGGCAGGAAAGTTTTGGGGAAGTTCTGTGGCCAAAGATCAACAGATGCACACCACCCTGGCCGCAAGTCCTTCTTGTCTTCTGGCAATCGTCTCCAGCTGGTGTTTGTGACTGACGGCTCAAACCCAGATCTTCAGCCACACCTCGGCTTCTCTGCTTTTTACCAGGCTATTGatGTGGACGAGTGTAGctctcctgtatcttctgaGGACTCTGGACCCCTCTGCTCTCAAATCTGCCTCAACACTCTGGGCTCCTACCAGTGTGCTTGTCATCATGGGTATCAGCTGCGGGATGATGGGCGTACCTGTGACTTACAATGTGGAGGGGGCATTTTTAAGGAGCCTGAGGGAACCCTGTCAAGCCCTGGATTTCCAAGCTCTTCCCCACTCAGACTGAACTGCACCTATAAAATCACTGCGAAGCCAGGCTTTGAAGTCACTCTCAACTTTAGTGACAGTTTTCACATTGAGCAGGTCTACAACCAGGGACACTGCCTCCACTGGCTGCTGGTAACCATCCCAGATAAACCCGCCCAGAAATACTGTGGTGACAAAAGCCCTGGTGTCCTCCACACTGGTTCCAATATGGTGCAGCTGGAATACTACACAGATGATGAAGGAGAGAGCCAAGGCTGGAGCCTAACCTACACCACCCAGAGAGTGAAATgtgaactgaaaaaaacaatcatCAATGGAAAGGTGACCCCAGACTTCCCCCAGTACTTCTACAGAGACTACATCCATGTGACCTGTGACAAGGGCTACAAACTCATGATGttggggaaggagattagGAGTTTTAGGTCCATGTGCCAACATAACGGGAAATGGCACTTGCCTTTACCAGAGTGCAAGATCATTGACTGTGGAGATCCCAGACCTCTGCTGAACGGCGGTGTCCGATTTCTCTCTGGCTCTAATAACGAGTACCGCTCCCTCATCCAGTACCACTGCAATGAACCATACTATGCTTTCAAAGACGTTCATCATGAAAATTTTAGCTGTGCTGCAGACCGCAAGTGGAGAACCAGTGATGAAAATGCTGTGATCCCTCCATGTTATCcagtgtgtggtcgCCCTAATGTAAGTCTCTCTGGGCGTGAGCGGGTGATGGGAGGAAAGGCAGCTCCAGCAGGTGCTTTCCCCTGGCAGGTCTTCCTCCGCACAAACGGCAGAGGTGGAGCGATCGTCATTGGGGACAGATGGCTCATGACTGCAGCCCACAATCTGGAAGTAGAGAACTTAACTAAAGAAAATGTGAAGGTGTATGTTGGAGACGTCCTTGTCAGTGAACTCATGAAGCACCAACCGATTCCTGTTGAATCATTACACGTCCACCCAGGATACAAAAACAACGCCATGAGAACAAATTTTGATAATGACATTGCGTTGATCAAGCTAAGCTCTCCAATCACCTTTAACTCAAATGTAATGCCAGTCTGTCTGCCTCCACAAGATACTAAACTGGAAAACAATGGCTGGGTTTCAGGATTTGGACTGACTGAAACACATACGACATCCAATAACCTCAGATACATCAAACTTCCTGTAGTGGACCAAGACACATGCCGCACATTTGTGGAGACTGAGAGAGCGACCCGCTCAGATGTGGCTCCACTGACAGATAACATGTTCTGCGGATTCCCTGAGGGCGGAGAGGACACCTGTTCTGGGGACAGTGGCTCAGCATTCGTTGCGAAAAAGAACGAAGAGTACTGGGTGGCTGGCATCGTTAGCTGGGGAGTTGAATGTGCTAAGGCAGGGAAATACGGCATATACACCCATGTTTCAAAGTACACAAACTGGATACAGAAAACCATGGAAGAGAACCAGTAAGGCAAACCTAAAAAGTGCCAGAATTAGCAAATGATTCAACATCAATGTAACGTGCATATTGTGTCTTcagcaaaaacaaatattttgtaacaatacattttgcCAGTATTTACTCTAAATGAACACATTGTTATGAATGTAGAGAAATgttaaccttcatttaaaagcttacattttattcaatttttaaattttaatggtGGGGAGGGTAATTGGTTAATGGTTAAGTTAAATCATtattgttaaattgttaaataataaaattttgaGTTTGAGAAATGCTTGGATTTAAATTACaggatataaaaaataaaatagataattaaGCTTGGAATATAAGTCTTGAATCATGTGATttgtagttttaaaaaaaatttgacaGTTAAGATAAAAGACCTGATGCTGACTCAAATGCATGCATGTATATTgaagataatgttttttttttttcaaaatcatTGTGCAGCTTTGCCACAACTGAACTAAGATCTAATTACCATATAGTCACCAATTAGCATGACAATCAGCTATGTCTATTaacatcaaaaaaataaaagcccaTCTTCCTTAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K01330 C1R; complement component 1, r subcomponent

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673816.1 True 2835 mRNA 0.44 15 25243231 25268739

Neighbor

gene id symbol gene type direction distance location
LOC103027368 NA coding upstream 704 25210240 ~ 25242527 (+)
LOC111188209 NA coding upstream 12729 25225774 ~ 25230502 (+)
LOC103023961 rbp5,LOC103023961,LOC108443655,LOC107671900,LOC108263531,LOC107724800,LOC107714611 coding upstream 59932 25178245 ~ 25183299 (+)
ptpn6 ptpn6,LOC107714609,LOC107704909,LOC108263538,LOC107671911 coding upstream 67521 25128822 ~ 25175710 (+)
LOC103021998 chd4,LOC107671917,LOC107724784,LOC107704911 coding upstream 115769 25094339 ~ 25127462 (+)
LOC111193304 NA coding downstream 4247 25272986 ~ 25278969 (+)
LOC103038714 NA coding downstream 14078 25282817 ~ 25292309 (+)
LOC103025221 NA coding downstream 24764 25293503 ~ 25311217 (+)
LOC111193354 NA coding downstream 48065 25316804 ~ 25327096 (+)
LOC103039026 NA coding downstream 66688 25335427 ~ 25345095 (+)
G93180 NA non-coding upstream 36373 25206570 ~ 25206858 (+)
G93151 NA non-coding upstream 109945 25132031 ~ 25133286 (+)
G93146 mlf2,LOC106605851 non-coding upstream 187569 25046996 ~ 25055662 (+)
G93138 NA non-coding upstream 301622 24941218 ~ 24941609 (+)
G93134 NA non-coding upstream 330960 24911417 ~ 24912271 (+)
G93354 NA non-coding downstream 65465 25334204 ~ 25334733 (+)
G93389 NA non-coding downstream 318455 25587194 ~ 25588046 (+)
G93387 NA non-coding downstream 319362 25588101 ~ 25589489 (+)
G93386 NA non-coding downstream 373331 25642070 ~ 25646500 (+)
G93388 NA non-coding downstream 379035 25647774 ~ 25653617 (+)
G93135 NA other upstream 277787 24914689 ~ 24965444 (+)
G93079 NA other upstream 534857 24698133 ~ 24708374 (+)
G92462 ptprub,LOC107705793,LOC107588504 other upstream 3891228 21269165 ~ 21352003 (+)
G92350 sh3d21 other upstream 4297725 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 4382295 20839975 ~ 20860936 (+)
G93185 LOC105900568,LOC101883708 other downstream 43138 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 998754 26267493 ~ 26392435 (+)
G93753 NA other downstream 1679724 26948463 ~ 26948879 (+)
LOC111193309 l3mbtl4,LOC108432753,LOC107698702,LOC107570871,LOC107728988,LOC107653885,LOC106590345 other downstream 2650353 27919092 ~ 27939933 (+)
LOC103021747 rheb,LOC107653878,LOC106590380 other downstream 3940539 29209278 ~ 29326025 (+)

Expression


Co-expression Network