LOC111188209


Basic Information

Item Value
gene id LOC111188209
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 25225774 ~ 25230502 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673820.1
tctctctctttctctctagtcTATGGATGCTatggatgagtgtgtgtgagtgcaagGAATCAAAGTATGGTCATGTTCAGTCCCCTCTGTACCCTGAGCCCTACCCAGTGGGTCTCTATATGCAGTGGTACCTGAAAGTTCCTCTTGGCTACCAAATTCAGCTCACTTTCAACCACCTGGACATTGAACCTTTTGCAAACTGCTCCAAAGACTCTCTCACAGTTCTGCATGATAATGAAGTTTTGGGGAAGTTCTGTGGCCAGACGTCAACTGACCCTCATCACCCTGGCAAAAATCCCATCATGTCTCCAAGCAACCATGTCCAACTAGTATTTGAGACAGATGAATCAAGGCCTCAGATGCACCTTGGCTTCTTTGTCTTCTATGAAGCAGTTGCTGTGGACTGTGGGATTCCAGATCTTCCAGATCTGGTGGCCCTAACAGAGGAGCATCCACTGACAACATACAAGCAGAATATCACCTTCAAGTGTTCATCAATATTCTACCAGCTGGTTGGACATGCTAACTTCACTTGTGATGCTAGTGGAAACTGGGTATCTGAAAGTGGACAGAATATATACCAGAATGCACCACAGTGTGTTCCAGAGTGTGGCATGAATGAAGAGTTTTTTCCGCGTGGACGGGTTTATGGAGGAGAGAGGGCCAGACTGAAACAGATACCCTGGCAGCTTCTGATGAAAGACCGCATGAGAGTAGGCGCTTCTCTAATTAGTGATCGCTGGGCTCTTACAGCTGCTACTGTTATGGATATATATGAAAGCCATACACTGAAATTCTATGGAGGAATGATTGATGGGAAAGACAGAAATGCAGTTATAATGGAAACGGAGAAAATCATAAttcatccagattatgaaagGAAAATATTAGGTGTAGACCGGACAACCTATGATAATGACATTGCCTTGGTGAAGATGTCTGAAAGGGTACCACTCAGTTTCAAAATCAGGCCAGTGTGTCTGCCAGAGAAGTCAGCTGGACCAGTGATGAAGGGAGCGATGGGAACAGTATCAGGGTATGGATTAACTGAAAACAGAACTATAAGTCAGTTTCTGCAGTATGCTCATTTACAAGAATATTCAGAAGTTCCTTGTTTTCAAAGTGATTTGAAGATCACTGATAATATGTTCTGTGCTGGAGGAGATGAGGCAGATTCATGTAGCGGTGATAATGGTGGTCCACTAGTCCTTCCAATGCTGGGAACTGGATCTCCAAATAAACCCTACCGACTCGAAGGTATTGTGTCATGGGGTCCTCGATGTGGAAATAAAGAATTtaagggttattacaccaaagtACAGAACTATCTGGACTGGATCAGAGAAACCATGGAGAAGAATTAACAACATcagcatttattacaaataacTACTAGGCTGATTATATAGAAGGTGATGTTGAACCCAATTACAGATGTATTTAAATCAGATGATACTC
>XM_022673823.1
tctctctctttctctctagtcTATGGATGCTatggatgagtgtgtgtgagtgcaagGAATCAAAGTATGGTCATGTTCAGTCCCCTCTGTACCCTGAGCCCTACCCAGTGGGTCTCTATATGCAGTGGTACCTGAAAGTTCCTCTTGGCTACCAAATTCAGCTCACTTTCAACCACCTGGACATTGAACCTTTTGCAAACTGCTCCAAAGACTCTCTCACAGTTCTGCATGATAATGAAGTTTTGGGGAAGTTCTGTGGCCAGACGTCAACTGACCCTCATCACCCTGGCAAAAATCCCATCATGTCTCCAAGCAACCATGTCCAACTAGTATTTGAGACAGATGAATCAAGGCCTCAGATGCACCTTGGCTTCTTTGTCTTCTATGAAGCAGTTGCTAACTTCACTTGTGATGCTAGTGGAAACTGGGTATCTGAAAGTGGACAGAATATATACCAGAATGCACCACAGTGTGTTCCAGAGTGTGGCATGAATGAAGAGTTTTTTCCGCGTGGACGGGTTTATGGAGGAGAGAGGGCCAGACTGAAACAGATACCCTGGCAGCTTCTGATGAAAGACCGCATGAGAGTAGGCGCTTCTCTAATTAGTGATCGCTGGGCTCTTACAGCTGCTACTGTTATGGATATATATGAAAGCCATACACTGAAATTCTATGGAGGAATGATTGATGGGAAAGACAGAAATGCAGTTATAATGGAAACGGAGAAAATCATAAttcatccagattatgaaagGAAAATATTAGGTGTAGACCGGACAACCTATGATAATGACATTGCCTTGGTGAAGATGTCTGAAAGGGTACCACTCAGTTTCAAAATCAGGCCAGTGTGTCTGCCAGAGAAGTCAGCTGGACCAGTGATGAAGGGAGCGATGGGAACAGTATCAGGGTATGGATTAACTGAAAACAGAACTATAAGTCAGTTTCTGCAGTATGCTCATTTACAAGAATATTCAGAAGTTCCTTGTTTTCAAAGTGATTTGAAGATCACTGATAATATGTTCTGTGCTGGAGGAGATGAGGCAGATTCATGTAGCGGTGATAATGGTGGTCCACTAGTCCTTCCAATGCTGGGAACTGGATCTCCAAATAAACCCTACCGACTCGAAGGTATTGTGTCATGGGGTCCTCGATGTGGAAATAAAGAATTtaagggttattacaccaaagtACAGAACTATCTGGACTGGATCAGAGAAACCATGGAGAAGAATTAACAACATcagcatttattacaaataacTACTAGGCTGATTATATAGAAGGTGATGTTGAACCCAATTACAGATGTATTTAAATCAGATGATACTC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0050817 coagulation biological_process
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673820.1 True 1458 mRNA 0.43 5 25225774 25230502
XM_022673823.1 False 1332 mRNA 0.43 4 25225774 25230502

Neighbor

gene id symbol gene type direction distance location
LOC103023961 rbp5,LOC103023961,LOC108443655,LOC107671900,LOC108263531,LOC107724800,LOC107714611 coding upstream 42475 25178245 ~ 25183299 (+)
ptpn6 ptpn6,LOC107714609,LOC107704909,LOC108263538,LOC107671911 coding upstream 50064 25128822 ~ 25175710 (+)
LOC103021998 chd4,LOC107671917,LOC107724784,LOC107704911 coding upstream 98312 25094339 ~ 25127462 (+)
LOC103047218 LOC103039613,LOC108443667,LOC105025850,LOC108272678 coding upstream 158109 25056858 ~ 25067665 (+)
LOC103045177 LOC103045177,LOC108443663,LOC107704918,LOC107714602,LOC107724799,LOC107552848,LOC107672019,LOC107587790 coding upstream 288593 24919853 ~ 24937181 (+)
LOC103038083 NA coding downstream 12729 25243231 ~ 25268739 (+)
LOC111193304 NA coding downstream 42484 25272986 ~ 25278969 (+)
LOC103038714 NA coding downstream 52315 25282817 ~ 25292309 (+)
LOC103025221 NA coding downstream 63001 25293503 ~ 25311217 (+)
LOC111193354 NA coding downstream 86302 25316804 ~ 25327096 (+)
G93180 NA non-coding upstream 18916 25206570 ~ 25206858 (+)
G93151 NA non-coding upstream 92488 25132031 ~ 25133286 (+)
G93146 mlf2,LOC106605851 non-coding upstream 170112 25046996 ~ 25055662 (+)
G93138 NA non-coding upstream 284165 24941218 ~ 24941609 (+)
G93134 NA non-coding upstream 313503 24911417 ~ 24912271 (+)
G93172 NA non-coding downstream 30636 25261138 ~ 25277719 (+)
G93354 NA non-coding downstream 103702 25334204 ~ 25334733 (+)
G93389 NA non-coding downstream 356692 25587194 ~ 25588046 (+)
G93387 NA non-coding downstream 357599 25588101 ~ 25589489 (+)
G93386 NA non-coding downstream 411568 25642070 ~ 25646500 (+)
G93135 NA other upstream 260330 24914689 ~ 24965444 (+)
G93079 NA other upstream 517400 24698133 ~ 24708374 (+)
G92462 ptprub,LOC107705793,LOC107588504 other upstream 3873771 21269165 ~ 21352003 (+)
G92350 sh3d21 other upstream 4280268 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 4364838 20839975 ~ 20860936 (+)
G93185 LOC105900568,LOC101883708 other downstream 81375 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 1036991 26267493 ~ 26392435 (+)
G93753 NA other downstream 1717961 26948463 ~ 26948879 (+)
LOC111193309 l3mbtl4,LOC108432753,LOC107698702,LOC107570871,LOC107728988,LOC107653885,LOC106590345 other downstream 2688590 27919092 ~ 27939933 (+)
LOC103021747 rheb,LOC107653878,LOC106590380 other downstream 3978776 29209278 ~ 29326025 (+)

Expression


Co-expression Network