LOC103036887


Basic Information

Item Value
gene id LOC103036887
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1516944 ~ 1519955 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104420
CCACCTTTACCTGCCTATACCTGTTTATCCTCTTCTTCCGGGCGTGGCTGCATCATAAATTCACCCTCAGCGCTGTGTTTCTCTCAGAGGTGAGCTATCAGAGACTACAGTGTTGATCTTGTTAACTCTAAAAAAGTGCTGCAAAATGAGTGACCCCAAGCCACCAGCTAAGCCTGAGGAAGGAAAGCCCCACGGAAAGCCTCAGGGAGAGGGAGGCCCCGGAGACAAGGGTAAAGGAAAGGGACCCGGAGGCCAAGGAAAATCTGCTGAAGCCCCGGGTCACGCGCACGGTCACGGACACGGTCACGCTCACGGAGACAaaggaaaaaagtgaaaaaagtgatGAGGAAGATGAACGCCGAGGCCTGATagacactgtgtttttttcatgcttGAACGTcaaataatgaaatgaaatgaaagtgtaattaaagtttaattaaCTAAATACCATGTGTTTGTCTTGATTTAAGTAAAGTATTGCTTTACTAAAGTATTAAAGAGTGTAATCTGAGCAGATTGTTGCAGATTGTTGTTTCTGCAtggttttaaatgttgtttaaaacaGCTGGAATAGTGATTTTTCAGTGCATCAGATCACACTGGGTGTGTCAGGTACAcattgtgggcgtgtcaaggtGAGCTCGGTGCATGTAATGGAAATTTACAGAGCAACaaaattctaaattctaaatcctaaatgtattaaatattgtattaaataaCATCAGAATAGAGCAATAGTtgattataattcattataataaaaaaatccaaaaagtaaaagaaatgaaTAATTGAATGAATTATGTCTTTTTAACCCTGGAACACTAACGTTAAAATCAGTAACACCTTCACTAACGTTGGGTATACACTCACTGCatgacaagttttggaacccttttttgtattttacaacaacatacaacatcacataaaataaataaaataaaataaaaaaggtaccatggatgaccctataaaaaaaaaaaagattggaaaatcaggtaaaaaaaatgatttaaacacttaaacacatcagcatcaacgtcaggtaaattacacccataaaatatcttACTCTCTATCAAAAACACCGGAGTAAAATCATCTGAATGCATGGGAGGAGGTAAttaaccataacattaatgacataaGTGAGCCCTGAATCTGGTGGCTGGAAAAAAACTTTCCAAACCAATCTAGACTTTTGTGAAGAAGTGTTTACCCCCT
>TU104421
CCACCTTTACCTGCCTATACCTGTTTATCCTCTTCTTCCGGGCGTGGCTGCATCATAAATTCACCCTCAGCGCTGTGTTTCTCTCAGAGGTGAGCTATCAGAGACTACAGTGTTGATCTTGTTAACTCTAAAAAAGTGCTGCAAAATGAGTGACCCCAAGCCACCAGCTAAGCCTGAGGAAGGAAAGCCCCACGGAAAGCCTCAGGGAGAGGGAGGCCCCGGAGACAAGGGTAAAGGAAAGGGACCCGGAGGCCAAGGAAAATCTGCTGAAGCCCCGGGTCACGCGCACGGTCACGGACACGGTCACGCTCACGGAGACAaaggaaaaaagtgaaaaaagtgatGAGGAAGATGAACGCCGAGGCCTGATagacactgtgtttttttcatgcttGAACGTcaaataatgaaatgaaatgaaagtgtaattaaagtttaattaaCTAAATACCATGTGTTTGTCTTGATTTAAGTAAAGT
>XR_452795.3
TGCCTATACCTGTTTATCCTCTTCTTCCGGGCGTGGCTGCATCATAAATTCACCCTCAGCGCTGTGTTTCTCTCAGAGGTGAGCTATCAGAGACTACAGTGTTGATCTTGTTAACTCTAAAAAAGTGCTGCAAAATGAGTGACCCCAAGCCACCAGCTAAGCCTGAGGAAGGAAAGCCCCACGGAAAGCCTCAGGGAGAGGGAGGCCCCGGAGACAAGGGTAAAGGAAAGGGACCCGGAGGCCAAGGAAAATCTGCTGAAGCCCCGGGTCACGCGCACGGTCACGGACACGGTCACGCTCACGGAGACAaaggaaaaaagtgaaaaaagtgatGAGGAAGATGAACGCCGAGGCCTGATagacactgtgtttttttcatgcttGAACGTcaaataatgaaatgaaatgaaagtgtaattaaagtttaattaaCTAAA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko05145 Toxoplasmosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU104420 True 1233 lncRNA 0.38 4 1516944 1519955
TU104421 False 479 lncRNA 0.47 4 1517698 1519955
XR_452795.3 False 437 lncRNA 0.48 4 1517729 1519944

Neighbor

gene id symbol gene type direction distance location
LOC103038790 LOC108430634 coding downstream 19601 1481744 ~ 1497343 (-)
LOC107197727 NA coding downstream 50545 1463238 ~ 1466399 (-)
LOC103037189 LOC103037189,LOC108269635,LOC108441826,LOC106588122,LOC106511380,LOC100701192 coding downstream 62354 1448800 ~ 1454590 (-)
LOC103039104 rab15,LOC103039104,LOC108441824,LOC105889812,LOC107671782,LOC107668202,LOC106608154 coding downstream 69209 1443327 ~ 1447735 (-)
LOC103039408 LOC108441822,LOC108269630 coding downstream 151170 1348948 ~ 1365774 (-)
inafm2 inafm2 coding upstream 54305 1574260 ~ 1577343 (-)
pak6 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding upstream 130891 1650846 ~ 1681013 (-)
bub1b NA coding upstream 170255 1690210 ~ 1696998 (-)
pld4 pld4 coding upstream 341850 1861805 ~ 1875477 (-)
cep170b NA coding upstream 359315 1879270 ~ 1910962 (-)
G77422 NA non-coding downstream 170428 1345354 ~ 1346516 (-)
G77421 NA non-coding downstream 171654 1344056 ~ 1345290 (-)
G77361 ywhaqb,LOC108436740,LOC107733143,LOC107752793,LOC107592764,LOC107697768,LOC105896734 non-coding downstream 198821 1278158 ~ 1318123 (-)
G77344 NA non-coding downstream 283527 1231285 ~ 1233417 (-)
G77356 NA non-coding downstream 305221 1211368 ~ 1211723 (-)
G77435 NA non-coding upstream 23248 1543203 ~ 1551699 (-)
G77440 NA non-coding upstream 40994 1560949 ~ 1563957 (-)
G77442 NA non-coding upstream 53369 1573324 ~ 1573546 (-)
G77586 NA non-coding upstream 89629 1609584 ~ 1650592 (-)
G77596 NA non-coding upstream 233729 1753684 ~ 1832249 (-)
gpx2 gpx2,LOC102306767,LOC100700650,LOC103363131 other downstream 75643 1438465 ~ 1441301 (-)
LOC103042803 LOC108441829,LOC108269607,LOC103136210 other downstream 85700 1368097 ~ 1431244 (-)
G77362 NA other downstream 242774 1273737 ~ 1274170 (-)
lin52 lin52,LOC107594798 other downstream 790714 708644 ~ 726230 (-)
ivd ivd,LOC107719458 other downstream 980897 459202 ~ 536047 (-)
LOC103034803 ppp1r14d,LOC105908342,LOC107678771,LOC108269636,LOC101077163 other upstream 194565 1714520 ~ 1764531 (-)
srp14 srp14 other upstream 333689 1853644 ~ 1860409 (-)
LOC111193168 NA other upstream 523004 2042959 ~ 2047241 (-)
gchfr gchfr other upstream 630833 2150788 ~ 2155348 (-)
G77656 NA other upstream 670358 2190313 ~ 2190653 (-)

Expression


Co-expression Network