G79865


Basic Information

Item Value
gene id G79865
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11969441 ~ 11971939 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107590
tgtaacgctgtgtgaaggacgggacgaggagagcggacgctaatgcaagtatcatttattatagaacagaaaacaaaacataaatcaaacagAAACTCAGAAACAGGAGACTAACAGGCAGGAtttaacacagccgtgacagacgtatacacgcacaagaaccgacaaaaacactaatgacagagactcttaaatacacacacaaggcgggaaagagaacaggtaacacctggggactgactaatgaggggcggagctacaaatggacacaggtgagtggaaaaacactggcagaacacaggggcacgggtaacgtgggacaacacaggcacgaggacagacaggaaacagggccaggcgtgacat
>TU107591
tgtaacgctgtgtgaaggacgggacgaggagagcggacgctaatgcaagtatcatttattatagaacagaaaacaaaacataaatcaaacagAAACTCAGAAACAGGAGACTAACTAACAGGCAGGAtttaacacagccgtgacagacgtatacacgcacaagaaccaacaaaaacactaatgacagagacgcttaaatacacacacaaggcgggaaagagaacaggtaacacctggggactgactaatgaggggcggagctacaaatggacacaggtgagtggaaaaacactggcagaacacaggggcacgggtaacgtgggacaacacaggcacgaggacagacaggaaacagggccaggcgtgacagaaacctccccctaaacgcgcagctcccgaggcgcgtaaaaacaaaccccgggggctggcggcagggagaggccggggaaaacaggagaccgaacgggagactggacagggaactggacaggtgacggagactggacggggaactggacaggagacggagactggacggggaactggacaggagactgagactggacggggaactggacaggtgacggagactggacggggaactggacatgagacggagactggacgggaccggacatgggaacagggacgagaACATTGACGGGGACGGACACAAACACGGTGACTGGGACAGGAACAGTTAAACCACaggggacaggaacaggaacgaACACAGATatggggaccaggacagggagagacaagGGAACAAAAAAcataggtgggtgcccaggactggcaaaagtctgtggggatagcctgggcacataactgggggcaaagtcaggaggcctaggagcaggcctggaaatacgGGGCCTGGGCCCAAACATAGTTCTGGGAGCTGCAGGTGCTTGGGCAGGAGCCGGAGCAGcagggactgctggtgcttgagctggagcagctgggactgctggtgcttgagctggtgctggcggcgcggcgacttgggcagctggcactggtacggagacttgggcagctggcactggtacggagactggaactgctggagcagacactgagactaGAACATTTTCAGCtaacacggaggcttcagcagcttcagcagacacggaggcttgagcattttcagcagacacggaggcttgagcagcttcagcagacacggaggctggagcagcacgCACAGCAGCATATGCAGAGTCTAGAGCGGCAGGAGTtcgggggcgtggctcagcagccgaagatGCCTCGTAGGTGGGCGTGTCCGCCGAGTGAGTTTCGGAGCTGGGCGTGTGGAGATCCAGCGCTGCTGCTGTGAGGCCTAGAGCCGCGGGTGaaacaaaaacccggactggattatTACTCCTGGAGAGCGGCTCGTCCACCGCAGCAGTCCCAGAGCGTGGCGTCTCATCCGCGGGCTTCACGGAGTGCACCGTCTCAGCCGCGAGAGTcgaggagcgcggatgagccacgggagtcacggaCTGTGGCGTCCCATCCACGGGcctcacggagcgcggcgtctcggccgcgggcttcACGCGAGCTGGCGTGGAAACAAGAGGCGGCCAGCAAACAGGTGCGGGATCAGGCAGCGGAAGGCGGGTTGGTGCGGAGAAAGGCTCctcgtcctcggagctgctgggagcacAGCCAAGAAAGTCCCACGGCTCCCGGGTAGCCCGGCCTCCTCTGTAAAGAGAaccgaggctaaccgcaccaacCCGTATTGCCCCCCCAAAATTTTCTCCGCTCCGAAAATCCTCCACAGGTGAGAGGGAGCGCTGAGAGCGCCG
>TU107592
tgtaacgctgtgtgaaggacgggacgaggagagcggacgctaatgcaagtatcatttattatagaacagaaaacaaaacataaatcaaacagAAACTCAGAAACAGGAGACTAACTAACAGGCAGGAtttaacacagccgtgacagacgtatacacgcacaagaaccaacaaaaacactaatgacagagacgcttaaatacacacacaaggcgggaaagagaacaggtaacacctggggactgactaatgaggggcggagctacaaatggacacaggtgagtggaaaaacactggcagaacacaggggcacgggtaacgtgggacaacacaggcacgaggacagacaggaaacagggccaggcgtgacat

Function

NR:

description
PREDICTED: synaptotagmin-11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107590 False 366 lncRNA 0.48 2 11969441 11971939
TU107591 True 1826 TUCP 0.59 3 11969964 11971939
TU107592 False 370 lncRNA 0.48 2 11969441 11971939

Neighbor

gene id symbol gene type direction distance location
pdzd8 pdzd8 coding downstream 160859 11642590 ~ 11808582 (-)
ttc27 ttc27,LOC107689788 coding downstream 606233 11220363 ~ 11363208 (-)
LOC111193129 NA coding downstream 760757 11205127 ~ 11208684 (-)
rasgrp3 rasgrp3,LOC107744459,LOC107670874,LOC107689794,LOC106576952 coding downstream 1033178 10822882 ~ 10936263 (-)
LOC103040295 LOC108430229 coding downstream 1170639 10790644 ~ 10798802 (-)
rlf NA coding upstream 153888 12125827 ~ 12150716 (-)
yipf4 yipf4,LOC107744423,LOC107670878,LOC106576945 coding upstream 547524 12519463 ~ 12524837 (-)
LOC103024740 LOC103024740,LOC108413681 coding upstream 758687 12730626 ~ 12735104 (-)
LOC103046657 NA coding upstream 849976 12821915 ~ 12835548 (-)
LOC103047466 papss2a,papss2,LOC108411876,LOC105900838,LOC107715960,LOC107583551,LOC107553500,LOC107670849,LOC107689802 coding upstream 949821 12921760 ~ 12950947 (-)
G79849 NA non-coding downstream 42708 11925392 ~ 11926733 (-)
G79844 NA non-coding downstream 53052 11911928 ~ 11916389 (-)
G79809 NA non-coding downstream 164247 11803065 ~ 11805194 (-)
LOC111193191 NA non-coding downstream 172917 11792985 ~ 11796524 (-)
G79806 NA non-coding downstream 179851 11787424 ~ 11789590 (-)
G79871 NA non-coding upstream 30892 12002831 ~ 12003304 (-)
G79879 xpo1,LOC108248917,LOC102788896,LOC107553835,LOC101480205,LOC102296990,LOC103353500,LOC107715966,LOC107689808,LOC101170539 non-coding upstream 44869 12016808 ~ 12019819 (-)
LOC103044551 NA non-coding upstream 91370 12063309 ~ 12064466 (-)
G79941 NA non-coding upstream 164045 12135984 ~ 12136660 (-)
G79960 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 non-coding upstream 251340 12223279 ~ 12374454 (-)
ltbp1 ltbp1 other downstream 785500 10941687 ~ 11183941 (-)
G79582 NA other downstream 1039845 10928640 ~ 10929596 (-)
LOC103027264 NA other downstream 1632725 10294488 ~ 10336716 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 1897557 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 3314424 8650628 ~ 8655017 (-)
G79945 NA other upstream 185647 12157586 ~ 12192028 (-)
ncmap NA other upstream 362460 12334399 ~ 12372804 (-)
edaradd edaradd other upstream 613223 12585162 ~ 12613731 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other upstream 900050 12871989 ~ 12912395 (-)
selenon selenon,sepn1 other upstream 1049178 13021117 ~ 13037306 (-)

Expression


Co-expression Network