LOC111194279


Basic Information

Item Value
gene id LOC111194279
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21764958 ~ 21827382 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677900.1
ATGTGTCGGATCAGGACCCGCTGCTGGTCAGCCCTGCCGGTTCTGCTCTCGTGGAGCCTGAGATCTGTTCTGGGGCTGAACGTAACACAGGGAGGCCAGCCCACCTGCCAGACAGGTTACTACTGTCCGGAGGGGGGAGAAACTGCAGTGCCGTGCCCCCCGGGAACTTTTGGGCCGAGTTTCTGGGCTGTTGATATCCGAGGCTGTATCAGCTGCCCTCCACACCACTACGCTCCCAGAGAGGGTCTGTCTGCATGTCTGCCCTGCGGCTCCACAGCACAGCAGCCTCTTACTGGCCAAGATAAATGTATTTGTCTGGGAGAAGGTCAGGTCTTTcagGCCAGTGATGGGCGGTGCCACTGTGCTCTGGGGTATCGCACTACACCGAGAGGAGACGCTTGTGAGCTGAAGGTATACGAGATCTGTAAGGACGGAAAGGCACGTGATCAGTATGGCGAGTGTTTGGACCCTAAACGCTGGAAACAGATGTGTTCTAACCAGGTGTGCTCGTCTCCGGAGCGGTACGAGGGCTTCGACAGCTCTCTGggtctgtgtttgtgtaaaacCCCGCCCGGTTCAGACCCGAGCCGGAGCGGGTGTGCAGGCTGGTGCCCCCGGGACCGAACCCAGGAACCACACCTGAGGCTGGTGTGCAGCTCTGCTACCCTTCAGCTGCTCTACACTgagtcagacagacagGTGAGGGCGTCCGGAGGCGTGCTGCTCTCCGTCCTTAAGCGCTGGGACTGGAGGCTGGAGTGTGACGGGCGTCTCGGCTTCTCCAGGCCCGTGTACTCAGTTCAGACGGGGGAAGCTGGTTTCTACGGGTTCCTCCGAGCCGTCCCTCCTGAAGTACGGAAgctgatactggagagcagccaaATCTCTCTAAGAACACACAGTGTGGTGGAGTTAAGAGGAAACAGTACCCACATGGATATggattctgattggcctgttggTTCAGCATCCAGAGGAGCCAGCAGTGGAGACTCTGTGGGCGTGATGAATCCGACAGCATGCTTACATCTGCAAGATATTCTACTGTTCACTGTGACTAAGCAGCACTATCCTCAGTATGATGTGGAGAACCTTTTCAACACTAACACAGCCTTCGACTGGGGACCTTTCAGACTCTTAGCGCAGGAGCTAACGATGGCTCAGTCCACCCGATCCCTGTTCTCTGTTACTTTCAGTGAACCCGGGGTGTACGTCCTCAAACTGAGCAGCAATCCATACAAACACATGTATGTGAAGGTTCTGCCGGCTGGAGGAGAGTGCTACGATAATGGACCGTTCTTCCCCACTGATCCACACCATGTGACCCGCATGGGCATCGCTCGCCAGCGCCAGCTCTTACTGAGACCCGACTGGCTAGTGATCGGAGGACTTCTAGCAGGAGCTGTAGTCGTGCTCTGCTTGTGTATCGTACTACTGATCCTCTTTAAAGAATACGGCTGGCCAGAGAAACTCCCCACCCAGGCCAGATACCGAACTCTGCAGCTCAACTACAACATGGACGACTACTCATCGAAGGGATCCCGAGTTGTGGCTCTGAAAAAGACTCACCGAAACCTGCAGATGGGGATGACGGAGGACCCAATGCAGAGAGCTGTGGCTCTCATGTCAGATGAATTCTGGGATTATGAGGAGCAGGTGGACCTGGAGGCCTTCAGTTCCAGCACTTTCTACGACATCCTGCTGAAGCACAGCGTCTCGGTCACGTCTCGACTCTGGCAGCTGAGAGGAGAGGTAAAGCAGCTGTACCAGGGAGTGCTGGGGAAGGTGCGAGGGCTCCAGCTGGGCTGGGGGGCAGCAGTCGGGGGTAAGTTGGAGGCTCTGGAGAGGCAGGTGGAGAAGGAGATGGTGCGGAGGAAAGCTCTGGGATCTCAGTTTGCTCAGCTGCTGGAGAGTCAGTTACAGATCCTGAGAGCTGAGTTAAAGCCTCAGCACATCCTGCACAAGACATTCAGCTCCGGCCTCAGAGAAAACCTCCGACTGCTCACACTGCTGACTGATAACCAGGCCTCGCTGTGGGACAAACACATCGAGAGAAGTGTTATAGAGCGGGTGGCTGTTCTGGTGGaggagatggttgagctggtaTCGACGGAGGCTCAAAGACAGGGATGCTGGGCTGTTCTTAAACAGGCTACAGGAGCTCAGCTGCTCTGTCCTGCTACtggagcagctctcagcagggATGATATCATTGCACCTGATGGAACGGTCCGAGCTTGTGATTCTGTTCATGTGGACCCCGTCACAGGCCTCATCCTGCCCACCATAAACGCCCACATGCTTCTGGCCAGCGGGCACAGCATGCCCGTCCCCCCGGACTTCTTCCTGCACCCACAGACGGGCCGGGTGCTGCCTGTGGTCGGGAACGTGAGCTTCGACCCGTCCAGCTCCACTCTGGTGTACACAGCTGATGCCTGTGTGGGTGAGGTGGGTAAATGGGATTCTCCTCTGCTTCCCTTCATCCCCTTCCCTTCCTCTCGTCACGCCGAGCTCACAGGGACCTCTAAGCTGCGGGGTCTCCGTGCGGGACAGAGACTGGTCTTAGGAGGACCCATGTGTGACTGGGACACCGGGGTACTGGTGCCCATCCTGGCTGTGACCATCCACCCCCAGACTGGTATGGTGTACCCACTGGGCGGGGTCTACATGTGCCCCATCTCACGTCTTTATCAGCCCATCCAGATTGGCTGCCCCATGCTGGACCCCCGCACAGGAAACATAGCGACGATCACAGGGGTCAGTCTGGACCCCCACACAGGAGCGGTTCTCCCAGTCGGGGGTCTGCTGCTGGGGGAAAGTTTCATCGAGCCCCTGAGTGGCAGGCTGGTCCGGGTGGGTGGAGGCAGCCTCCGCGGGGGGAAGGTGGTGCCACACGCCGGGGGGTTCCAGGCTCTGCTGGACAGCCAGGCTCTGGGGGCGAGGATGCGGCTGGTGGAGCTGCTCCGGGGCAGCTGTGAGGAGGAGTGGAGCACCGGGACTCTGGAGCTGAACCGTGAGATCAGCAGACTGAGAGCTGCCtcctcagagctggagcaggTCTGGAGGAACAGCCAGCACTGCATGCTCCAGCTGCTCAGCCGAATAGAAGCCCAGCTGGAGTGGGCCTGGGGGGTGGCTGAGGACGGGGGCAGTCTAGGGGAGGTCAAGCTTCCTGGCACTGAGCTGTCTCTGCCCGCTCTGCCAGGCCTGGAGTATCCAGATCCTGGAGGTTCTGGTCTGTCTGTCCCTGTTCTTGGAGCCCAGCTGGACTGGGTCTCGGGGTGCACGGTGCCCCTGTTTGGAACCATGGAGGACGCAGATGGAAAAGGACTAAGCCCAATCCGCTTTGGGGCGCGGACAGTGGACCCGGTTACAGGGGTTCTGGCTCCGGTAGTTGGGGCTCGGCTGGACATGTGGAAGCGGACTGTGGTCCCGGTGACTGTGTCTCATTGCCTGACCATAGGAGACACTCCAGACAGTGTACTGGTGGAGGCCTTAAGAAGAGAGTGTGGTGCGAGAGCTGGGTACTGGAGACAGCAGAGAGTGAAGGAGGAAGAGCTGGTGTCGGATTTAGAGCGAGCTCTGAGGAACTGTCTGGACGTGGCGGTGCAGGAGGAGTCGGACTGTcttctgtggagagacatggAGAGGCAATtgaaagaagcagcagcagatcttcaAGAGGCAGCCCACACTGAAGCTCAGAGGAGAAACGCTCAGAACTCAGAGCTCTCGCTCCTCCTGCCCGCCCACATCCTGCTCGTCCTCACTGGAGgtgatGAGGAAGAGTGGGAGCAGCAGAGTCAGTGCCAAACTGAACTGACGACTGTGTTGAACAGAGTTACTGTGCTGATGGTAAAGCAGCAGTGGGAGCAGGACCAACCAACACTGAGAGCTGAGCAGGCGGATGAGAAGATGAAGATGAGGGAGCTGTGGAAGCAGTTAAAGCAGAGACTCGCTGAGCTGGACGCTGCGCTGTCTTCAGTACACTGGAGCTGTGAGCTTAGCCAGATCCATGCTGACACTGCACAGTCTATGCTCTCAGGCACGTTCTGGTACAGGGATTATGGTCTGCTGCAGCCTAAAGCCGGGAGAAACCCTCTGAAAGCCGCCTCCATGACTCAACACAAAATTCTCCCTCAGCTGGAGCGTCTCATTCAGCTGCTGGAAGACGGAAAGCTCCCCAGCCCCTCCAGCAGAGCCCAGCGCCAGCAGAGCTCCGAACTGTCCACAAAGCAGACGTTTGACCGAGACACATGCTCCAGAGCGTGGACTGTATCCGTCCCAGCAGCTAAAGCTGTTTCTGCTCAGTCTCTGAAAGATCATGAGAAAGCGTCGGCTGTGAGTGAGGAGATCAGCAGGAAGCTGCCCCTGTCCAGCACGTCCCCTACACACAGAGGACAGGACAGCAGCCTTGCTGAAAACCAGGACGATCAACACATCAAGGATCCTGGGATGCCCATCGACCTCACTGTCCCCAAACTGCCAGGTGAGGACTGGGCTCGGCTCCTGCAGATCTCCCCGCTGTTCCAGCTCATCAGAGAGGTGGAGCAGCAGATCAGAAACAGAGTGTGGAAAACAGGCCTGTTCAACAGCGACCAATCGGGTACCTCATAAACCACCAGTTCATGACTTATTTATTGATGCACAAACTGATTTAAAGAGACTTTCTACAGGATTTTGTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677900.1 True 4687 mRNA 0.57 27 21764958 21827382

Neighbor

gene id symbol gene type direction distance location
LOC103031614 ppp2r1b,LOC104918016 coding upstream 167606 21574950 ~ 21597352 (+)
nkapd1 LOC103031305 coding upstream 215871 21544356 ~ 21549087 (+)
LOC103033418 ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523 coding upstream 711103 20994106 ~ 21053855 (+)
LOC103030893 arcn1,LOC108436511,LOC108278096 coding upstream 804722 20951343 ~ 20960236 (+)
pih1d2 NA coding upstream 856151 20902276 ~ 20908807 (+)
ttc12 NA coding downstream 17383 21844765 ~ 21905395 (+)
LOC111194280 NA coding downstream 91836 21919218 ~ 21931304 (+)
ankk1 NA coding downstream 111007 21938389 ~ 21955844 (+)
LOC111194234 NA coding downstream 481970 22309352 ~ 22318452 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding downstream 524987 22352369 ~ 22391001 (+)
G12445 NA non-coding upstream 22654 21741857 ~ 21742304 (+)
G12424 NA non-coding upstream 48569 21679840 ~ 21716389 (+)
G12428 NA non-coding upstream 79016 21685357 ~ 21685942 (+)
G12421 NA non-coding upstream 116315 21648352 ~ 21648643 (+)
G12414 sik2b,LOC108436519,LOC108277697,LOC107657230,LOC107717286 non-coding upstream 141397 21622628 ~ 21623561 (+)
G12470 NA non-coding downstream 72088 21899470 ~ 21899720 (+)
G12483 NA non-coding downstream 110359 21937741 ~ 21984852 (+)
G12492 NA non-coding downstream 164961 21992343 ~ 21993142 (+)
G12496 NA non-coding downstream 203058 22030440 ~ 22082671 (+)
G12497 NA non-coding downstream 212471 22039853 ~ 22066354 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 301309 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 774894 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 788681 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 2320127 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 4621610 17139425 ~ 17143348 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 473614 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 646270 22473652 ~ 22517780 (+)
G13067 NA other downstream 2026616 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 2873460 24700842 ~ 24722676 (+)
G13237 NA other downstream 3028551 24855933 ~ 24857022 (+)

Expression


Co-expression Network