LOC111194200


Basic Information

Item Value
gene id LOC111194200
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 17139425 ~ 17143348 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15117
gacaaaagtgagtacagaaGCCTTTATAAAGGCTCGGGCAGAGGAAGAGGCTCTCTTCACTGGAGAGAAAAACTCTGCCATGAGTGGATGGAGGACTGTGCTGCAAAAAATCGGCCTGGAGGGCAAAGTGGCCCCTCAGCAGGCCAGAAAAAagtgggataaaaaaaatacaaaGTGGCAGTTCATCTCCAGCACCCAGGCATATGTTGTGGAGAATGGCGCAGGAGGCAACCACTGTTGGCACAAAAGAGGGGTGGACTTCTAGGGCCTTCAGGAAAATGGAACGCCACCGAGTCTTCATGATTCCAAAAGCTCTTTCGATCACAGAACGTGCTTTTGAGTGGTACCTGTTAAACACCCTCTGTCTTTCATCCCTCAGTGGCCGCTTATATGGTGTGATGAGAGCCAGGGGCCTCTGAAGACATGGATACCCCCCATCTCCCAGCAGGAAAGtgcggttttttttttttttccggaggTTTTAGACCGCAGTGCGATAAAGGGGGCTGTGTTTCAAGACCCTAGAGTCGTGTACAGAACCAGGAAATCCAATGTACACATCAAGGAATCTGGCCCGGTGGTCACACACAGCCTGGAGATGGCGATGGATGGTAAAAAGTTTCCGATTTCGGTAGCATCCAGTGTCTGGCTCCTCCGGGGCTTTAATACTTGCTGGCACACAGATGACCCTGCTCAAGATGCCCATCAGCTCCTCTGAGACTCGGTGGACAATTCTGCAGACAGTGGTCTTGGGGATGCTGAACGCCCTGGACACCACCCGATATGAAGCTCCACTTGCAAGCCAAAACAGAAATACCAGCACTTCAATTGTGCGTCCCCACCCATGATGGCGTTCCTGAGAGAGCATTCTGAGCAAAATGGCCAGTGACTCCCGTTTCAACCGAAAATCTGGTTGAGTGTCTTCCTCAGTGTGAAAATAGAGGTTGAGCTGAGGAATCGACTCATTCACGGAGCAGTAGCGAGTTCCTTGGTATTCATTCTGGGGTGGAGAAGTAAagttaaaattatgtttataaCATGACTGG
>TU15118
CTAGATTATGTGTAAACAAGTTATTCAGAAGGATGTGGGGAACAGGAACGAAATGTTTAAACAGATCAGTAAACACTGGGTACATTTGTATAAAAATTGAATAATCATGTATAAATACTCAGACAACTGAGACAACTATGAAGAGcttatttttacaaaacataACTAAGACCTAGGCACACCAGCTAACACCTCAGCACAGAGCTCCTCTCGAAGAGCATTTCCATTTGATGTGTCTTGGACACCCTCTTCACTCTCTGTGTCTTCTTCACGACAATCTTCTTCAGGTGGCAGTTCATCTCCAGCACCCAGGCATATGTTGTGGAGAATGGCGCAGGAGGCAACCACTGTTGGCACAAAAGAGGGGTGGACTTCTAGGGCCTTCAGGAAAATGGAACGCCACCGAGTCTTCATGATTCCAAAAGCTCTTTCGATCACAGAACGTGCTTTTGAGTGGTACCTGTTAAACACCCTCTGTCTTTCATCCCTCAGTGGCCGCTTATATGGTGTGATGAGAGCCAGGGGCCTCTGAAGACATGGATACCCCCCATCTCCCAGCAGGAAAGtgcggttttttttttttttccggaggTTTTAGACCGCAGTGCGATAAAGGGGGCTGTGTTTCAAGACCCTAGAGTCGTGTACAGAACCAGGAAATCCAATGTACACATCAAGGAATCTGGCCCGGTGGTCACACACAGCCTGGAGATGGCGATGGATGGTAAAAAGTTTCCGATTTCGGTAGCATCCAGTGTCTGGCTCCTCCGGGGCTTTAATACTTGCTGGCACACAGATGACCCTGCTCAAGATGCCCATCAGCTCCTCTGAGACTCGGTGGACAATTCTGCAGACAGTGGTCTTGGGGATGCTGAACGCCCTGGACACCACCCGATATGAAGCTCCACTTGCAAGCCAAAACAGAAATACCAGCACTTCAATTGTGCGTCCCCACCCATGATGGCGTTCCTGAGAGAGCATTCTGAGCAAAATGGCCAGTGACTCCCGTTTCAACCGAAAATCTGGTTGAGTGTCTTCCTCAGTGTGAAAATAGAGGTTGAGCTGAGGAATCGACTCATTCACGGAGCAGTAGCGAGTTCCTTGGTATTCATTCTGGGGTGGAGAAGTAAagttaaaattatgtttataaCATGACTGG
>XR_002650987.1
gacaaaagtgagtacagaaGCCTTTATAAAGGCTCGGGCAGAGGAAGAGGCTCTCTTCACTGGAGAGAAAAACTCTGCCATGAGTGGATGGAGGACTGTGCTGCAAAAAATCGGCCTGGAGGGCAAAGTGGCCCCTCAGCAGGCCAGAAAAAa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15117 False 1046 lncRNA 0.57 4 17139425 17143348
TU15118 True 1159 lncRNA 0.64 2 17142091 17143348
XR_002650987.1 False 153 ncRNA 0.51 2 17139425 17139779

Neighbor

gene id symbol gene type direction distance location
LOC111194187 NA coding upstream 187433 16948260 ~ 16951992 (+)
LOC111194175 NA coding upstream 192986 16942304 ~ 16946439 (+)
meioc NA coding upstream 714499 16410515 ~ 16424926 (+)
LOC103035750 kcnh6a,kcnh6,LOC108427397,LOC107674162,LOC107570755,LOC107583039,LOC107658465 coding upstream 872228 16185008 ~ 16267197 (+)
gfap gfap coding upstream 967045 16155230 ~ 16172380 (+)
LOC103039111 tiam1b,LOC108411134,LOC107705640,LOC108278361,LOC107670130,LOC107669892 coding downstream 1030728 18174076 ~ 18215882 (+)
LOC103031729 NA coding downstream 1097070 18240418 ~ 18263534 (+)
LOC103033316 NA coding downstream 1185290 18328638 ~ 18336309 (+)
dhx40 dhx40,LOC107659925 coding downstream 1198622 18341970 ~ 18352051 (+)
cltc cltc,cltcb,LOC108443353 coding downstream 1215622 18358970 ~ 18388263 (+)
G11107 NA non-coding upstream 578044 16561120 ~ 16561381 (+)
G11106 NA non-coding upstream 584123 16554856 ~ 16555302 (+)
G11099 NA non-coding upstream 649216 16489985 ~ 16490209 (+)
G11090 NA non-coding upstream 664051 16474408 ~ 16475374 (+)
G10932 NA non-coding upstream 750973 16352730 ~ 16388452 (+)
LOC111194208 NA non-coding downstream 60214 17203562 ~ 17204983 (+)
G11228 NA non-coding downstream 308340 17451688 ~ 17452181 (+)
G11255 NA non-coding downstream 388613 17531961 ~ 17532271 (+)
G11266 NA non-coding downstream 469748 17613096 ~ 17613324 (+)
G11267 NA non-coding downstream 480074 17623422 ~ 17623792 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 838758 16224721 ~ 16300667 (+)
LOC107197663 NA other upstream 1088500 14801118 ~ 16050925 (+)
ddx42 ddx42 other upstream 1104141 16011694 ~ 16035284 (+)
G10879 NA other upstream 1179047 15952846 ~ 15960378 (+)
G10838 NA other upstream 1370182 15758762 ~ 15769243 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 2269459 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 3819701 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 3832856 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 4316502 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 5157648 22300996 ~ 22384972 (+)

Expression


Co-expression Network