G11228


Basic Information

Item Value
gene id G11228
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 17451688 ~ 17452181 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15161
acccactatcagacctcactacaactcccataattcacctacacccactatcagccctcactacaactcccataattcacctgcacccactatcagccctcactacaactcccataattcacctgcacccactatcagacctcactacaactcccataattcacctgcacccactatcagacctcactacaactcccataa
>TU15162
cccactatcagacctcactacaactcccataattcacctgcacccactatcagacctcactacaactcccataattcacctgcacccactatcagacctcactacaactcccataattcacctacacccactatcagacctcactacaactcccataattcacctgcacccactatcagccctcactacaactcccataattcacctgcacccactatcagacctcactacaactcccataattcacctgcacccactatcagacctcactacaactcccataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15161 False 201 lncRNA 0.48 2 17451688 17452181
TU15162 True 284 lncRNA 0.48 2 17451857 17452181

Neighbor

gene id symbol gene type direction distance location
LOC111194187 NA coding upstream 499696 16948260 ~ 16951992 (+)
LOC111194175 NA coding upstream 505249 16942304 ~ 16946439 (+)
meioc NA coding upstream 1026762 16410515 ~ 16424926 (+)
LOC103035750 kcnh6a,kcnh6,LOC108427397,LOC107674162,LOC107570755,LOC107583039,LOC107658465 coding upstream 1184491 16185008 ~ 16267197 (+)
gfap gfap coding upstream 1279308 16155230 ~ 16172380 (+)
LOC103039111 tiam1b,LOC108411134,LOC107705640,LOC108278361,LOC107670130,LOC107669892 coding downstream 721895 18174076 ~ 18215882 (+)
LOC103031729 NA coding downstream 788237 18240418 ~ 18263534 (+)
LOC103033316 NA coding downstream 876457 18328638 ~ 18336309 (+)
dhx40 dhx40,LOC107659925 coding downstream 889789 18341970 ~ 18352051 (+)
cltc cltc,cltcb,LOC108443353 coding downstream 906789 18358970 ~ 18388263 (+)
LOC111194208 NA non-coding upstream 246705 17203562 ~ 17204983 (+)
G11107 NA non-coding upstream 890307 16561120 ~ 16561381 (+)
G11106 NA non-coding upstream 896386 16554856 ~ 16555302 (+)
G11099 NA non-coding upstream 961479 16489985 ~ 16490209 (+)
G11090 NA non-coding upstream 976314 16474408 ~ 16475374 (+)
G11255 NA non-coding downstream 79780 17531961 ~ 17532271 (+)
G11266 NA non-coding downstream 160915 17613096 ~ 17613324 (+)
G11267 NA non-coding downstream 171241 17623422 ~ 17623792 (+)
G11270 NA non-coding downstream 190606 17642787 ~ 17643043 (+)
G11272 NA non-coding downstream 213408 17665589 ~ 17665815 (+)
LOC111194200 NA other upstream 308340 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 1151021 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 1416404 16011694 ~ 16035284 (+)
G10879 NA other upstream 1491310 15952846 ~ 15960378 (+)
G10838 NA other upstream 1682445 15758762 ~ 15769243 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 1960626 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 3510868 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 3524023 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 4007669 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 4848815 22300996 ~ 22384972 (+)

Expression


Co-expression Network