LOC111194175


Basic Information

Item Value
gene id LOC111194175
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16942304 ~ 16946439 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677659.1
TGACGCAAAACCAGAAGAAATGCTGAAATTCAAGTTTACAGCTTCAGATGTTTCGTGCCAGTTCTGCTTAAACAGGTCCCACTGTTTGCATTGAAAAGCAAGCATTAAGTATGTCTTTTCCTCGTTTAACTATATAAATAACTGTATTCCATTTTCTGTGAAGATTCGTCTTTCCACTAAGACATGGCAGCTTCAGAAGAAGtcaTCATGATCCCTGATTCAGATCAACAACAACACTGTACAAAAAGCAGAATTGGTCAGCGTTTGGTCAACAGTGCAGTTTTACTGGGACTCGTTGCAGGTCTGGGTGGAGGGGGACTCTTCGGTGTGGCGATCGATGATGCGATAGTCCGTGTTAAGAATACGTCGTTATTAAAAGCTCAGGAGGACAACTGGTATTCCACAGCAATACTACTGTCAACAGTGGGTTTAGTGATTGCCATGATTTCATCACACATTGGAATAAGACTGGGATACGCAGCGTATCATTTCCTGATCAGAATGAAAGGAGAGCACGCCAACGTTGTGGCCTTAGAGGGCGCCACACCCGTAGCATTTCTGGGAATCACTGCCAGTGCAGCTACAATGGGGGCCGCCTACAGCAAATGTATGCTGGAGTTCGGACTGTTCGAAACATTTCTGCTTTCGTTtggattatttttcattttgccGACTTCTGTAAACTGTCTAGCTTTGATTCACAGTGATGAACATGCCATTTATTTTGCCGGTTCTTATGTGTTCATAATAATATATGGCATTGCTTTTTATTCTCTAATGTGGTCCCTTTTCTTGGGATTGGCTGGTGTgtattttcatttctttgtcctggttttagttttatatgCATATTATTATTGCGTACATGAGGAGTTTAAGCTGAAACATGTAATGGTTTCAACTGTTTATCCAATAGTATTGCTTTTATTTACCCTGCTGTTTTTTGTTGGTACTGCAATGGCATCACTGTCTGCAGCTGAAAAGGGACCAGCTGTTGGAGTTCTGGCCACAcagctgttggaggctgcagTGGGGCGCTTGGTGTATCTCCAGGctggtggtgggggtggtgcAGGGGCTTGGAAGGTGTTTTTGGGTGCATGGAGTGCGGGAAGTGCTGTTTTAGCGACCATTCAGAAGTCCTCTGTAATGGTGAATACAGGGGCAAGGTTATGGGGTCTGATTGCTGTTTCTGGAGCAACTGGTGTGGTCCTCTCTTCAGTGGGGGAAATGGGTCAGAAATACGGAAAGGCGTGGAACCAGGAGTGGGGAGGAATGTTGGGCAGGGCAGCGGCGATAGTGGGAGCAGCAGTCGGAGCTTTTCTTACAGGAGGGACAAAAGATTTGACCTATGGATTTTTTAAGTCAGTGTGTGCAGCTATAATTCCCGGGATGCCGTTTGTGGAATACATACTTAATGTCTTTTATCGTGGTCTACAATatctatttacaaaaaatgtaaggatttttCATCATTGCATTTTTCGCTTtaataatcacatttaaaatgaaattaactATAAATttaagctccactaggtaggactatagttgcagagtgtaataaatgtttcaggccgattagtttctttttctcgttttctggctttcacagacatattcggtctctttccagcttctgccaggtTCTGTTattgttagtttgtaaagaatgaaccagtagtccagtagaactgttagaactaaaggtcggaaagcaggtcgcagttcttgcGAGCGTTAGTCGCGGCCACCTTGGAAAACTTACAGTCTgatttgagctcagaggagcttcggcacagacacgagagcaccgctattcctcctattacacctcaatggagtgctgcagtgagtttcaagctgtaatttcacttctttaaaaagatcaaaaatcaaggaaatcctacctagttgGGCTTTAAAACGCATGGTGGTGTAGAGAAGTTTTTATGAAGCATGCTTTATTTTCAGAAATTCAgtttcatttttgttgttttagggCAACACTGTGCAGTAAGGCAACATCTGTTTAATAAAGTCTTTGCTGACAATGTAGTTAGATACTGTCCCCACATTGTTATTCAGAAAAGTTAACacaaggtattttttttttattattattaacaggtGTCACAATACGTTTaagtttgctgttttttttgttttgatttttgtACTGTTATCTGTGCATTGTGCCATGATGTGTGAAACCAGAATTTagtaagtaataaataa

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677659.1 True 2238 mRNA 0.41 3 16942304 16946439

Neighbor

gene id symbol gene type direction distance location
meioc NA coding upstream 517378 16410515 ~ 16424926 (+)
LOC103035750 kcnh6a,kcnh6,LOC108427397,LOC107674162,LOC107570755,LOC107583039,LOC107658465 coding upstream 675107 16185008 ~ 16267197 (+)
gfap gfap coding upstream 769924 16155230 ~ 16172380 (+)
map3k3 map3k3,LOC107674169,LOC107570753,LOC107658467 coding upstream 806930 16090023 ~ 16135374 (+)
limd2 limd2,LOC107721965,LOC107674139,LOC107658411 coding upstream 861610 16046254 ~ 16080694 (+)
LOC111194187 NA coding downstream 1821 16948260 ~ 16951992 (+)
LOC103039111 tiam1b,LOC108411134,LOC107705640,LOC108278361,LOC107670130,LOC107669892 coding downstream 1227637 18174076 ~ 18215882 (+)
LOC103031729 NA coding downstream 1293979 18240418 ~ 18263534 (+)
LOC103033316 NA coding downstream 1382199 18328638 ~ 18336309 (+)
dhx40 dhx40,LOC107659925 coding downstream 1395531 18341970 ~ 18352051 (+)
G11107 NA non-coding upstream 380923 16561120 ~ 16561381 (+)
G11106 NA non-coding upstream 387002 16554856 ~ 16555302 (+)
G11099 NA non-coding upstream 452095 16489985 ~ 16490209 (+)
G11090 NA non-coding upstream 466930 16474408 ~ 16475374 (+)
G10932 NA non-coding upstream 553852 16352730 ~ 16388452 (+)
LOC111194208 NA non-coding downstream 257123 17203562 ~ 17204983 (+)
G11228 NA non-coding downstream 505249 17451688 ~ 17452181 (+)
G11255 NA non-coding downstream 585522 17531961 ~ 17532271 (+)
G11266 NA non-coding downstream 666657 17613096 ~ 17613324 (+)
G11267 NA non-coding downstream 676983 17623422 ~ 17623792 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 641637 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 907020 16011694 ~ 16035284 (+)
G10879 NA other upstream 981926 15952846 ~ 15960378 (+)
G10838 NA other upstream 1173061 15758762 ~ 15769243 (+)
G10825 syt5a,LOC108427381,LOC107658481 other upstream 1286966 15650282 ~ 15655338 (+)
LOC111194200 NA other downstream 192986 17139425 ~ 17143348 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 2466368 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 4016610 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 4029765 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 4513411 21459850 ~ 21463649 (+)

Expression


Co-expression Network