gfap (gfap)


Basic Information

Item Value
gene id gfap
gene name gfap
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16155230 ~ 16172380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251110.3
cacactctctctcaataTAAAAGCCTTCTTTCCCTGGTGTTCAACCCCATTTGCCCCAACATGGAGAGCCAGCGTGTTCTCTCTTCTTACCGCAAGCGCTTCGGGCCTCAGGGCTCTACCGGGTCCCCTGCCCTGTCCAGCCGCCTAAGCACTGGCCGCCTGTCCCTCCACAGCACCCCTCGCCACCTGACCCTGTCCAGCCCGGGAGCCCTGTCCACCTCCCGGCTGTCCCTCGGTGGCGAGCGGCTGGACTTCTCGGCCGATTCTCTGCTGAAGGCACAGTACCGGGAGACTCGCACCAACGAGAAGGTGGAGATGATGGGGCTGAACGACCGCTTTGCCAGCTACATTGAGAAGGTGCGCTTCCTGGAGCAGCAGAATAAGATGCTAGTGGCCGAGCTGAACCAGCTGCGGGGAAAAGAGCCCAGCCGCCTGGGGGACATCTACCAGGAGGAGCTGAGGGAGCTGCGGAGGCAGGTGGACGGCCTCAATGCAGGGAAGGCCAGGCTGGAGATTGAGAGGGACAACCTGGCGGCTGATCTGGTCACACTCAAACAGAGaCTTCAGGATGAGACTGCACTGAGGCAGGAGGCTGACAACAACCTGAATGGATTTagacaggaTGTGGACGAGGCAGCTATGAACAGGGTTCAGTTGGAGAGGAAGATTGAAGCTCTACAGGATGAGATCAACTTTCTGAAGAAAGTTCATGAGGAGGAGAtgaaggagctgcaggagcAGCTGATGGCTCAGCAGGTTCATGTGGATCTGGATGTGTCCAAACCTGACCTGACTGCTGCTCTGAGGGATATCAGAGTGCAGTATGAGGCCATGGCCTCTTCTAACATGCAGGAGACTGAGGAGTGGTACCGCTCAAagTTTGCGGATCTGACAGACGCTGCCAACAGGAACGCTGAAAGTCTAAGGCAGGCAAAGCAGGAAGCCAATGATTATCGTCGACAGATACAGGCCCTGACCTGCGATCTTGAGTCCCTGCGAGGAACTAACGAGTCTTTGGAGCGTCAGCTGCGTGAGATGGAGGAGCGGTTCTCCATTGAGACAGCAGCGTATCAGGACACAGTGGTGCGTCTGGAGGATGAGATCCAGACGCTGAAGGAGGAGATGGCTCGACATCTGCAGGAGTACCAGGATCTGCTCAATGTCAAACTGGCCCTGGATATAGAAATTGCCACCTACAGAAAACTCCTGGAGGGCGAGGAGAGCAGGATCACAGTTCCTGTGCAGAGTTTTGCTAACctgcagttcagagAAACCAGCATGGACACCAAACTGACCCCAGAGGCTCATGTGAAGAGGAGCATTGTTGTCCGAACTGTTGAAACCCGTGATGGAGAGATTATAAAAGAGTCGACCACGGAGAGGAAGGACCTGCCATGATCTCACAGCTGCTGGAGCTAATGGCAATGACGAGGAGAGAGAGGCCTGACACGAGCTAGCCTTCAGTGTCCCTCACCATCATATCCACCCTAATGCTTCCAGACACTGATCTCAGCTCATCCCCCCATCTTCATCGCTCGGGGGTCACTCTAGGGGCTGACTAATCTGAAAATGTTGCCACTGATACCAATACTGATGTTAAGGAGCTATAAACACTTCACTAAACTCTAATCTGAGCTGATTTCATTGATTTTAAATCTACAGAATATTTCTCATGCTAAATTTTCACGGCTAATCATATCAGTTTGAGTTAACAAATCCACTGGAATGTGATGTTTTTAACTGTGTGTTGAGAAGTAAACTAGTACAATTACTACAGTCTAATGTAAATTATGCAGTAGAATGTAAAAGGTTTCAGAGCAATTTTATTGAGTTAACACAACATATTTTATTCAACATTCTCCTAAATCATTTATTCAGTTTGACCATCAATAGAAAATGAGTTGAGCCTCAAAAACATGAATTTAATAAACTTCAAAATGTCAGACTCCTGTGGCTCCCATTTGCAGGTCACAAATCCCCCTATACAATAGATGAGGCCATCCTATTATCCGACTCCTGACCACAGAGGACGGTGTTGTTGAAGGGATTTATACATCTTCTGTGTCTCTTGCCAagcaggcagttagacagtCGCACCACTTGAGAACTGTAAAACCATGtactttgttttgtttacaCTTCTGTCACCAAGAAAGAACAGAAAGGTAAATCTACTAAGTATTGTGTTTTAATACAGTGTTGTTTCACAGCTCCAGggtggccctacagtctaactgctaACTGCTGCTCATCAAGCATGAGGAGATCAATCATTACAAAGTATTAGTGTTTCACTGCCAAAAGCCTCTCAGTTTGGGGATGTGATCAGAGGGGTTTTAACCTGCAGATGAGTAAACAGATGTGGGGGAGgagctattatatatatttcagttgttTTGGGGGCTCAAAtcaatgtactgtatgttgctGACTAAATTTAAGAACTCacaagttgagttaactcacaAATTGCTTTGTAATCAGACCAATCTGATGTTAATATTGTTTGATTTCATCTGACAAACAATATATGAAGTCAGGCCCTAGTTCAGGCCCTTCATCTGTTGATTTACTTAATATTAACATCATTTACAAGCAAAATAAAAGCCATTCTCTTTCTTTAAATAGCTAGACAAAAGGAATGGGaaatatatagtaaaagtaTGACACTGACTGTGCCCAATATAAGGGATCACAGGTCAGTTTACATTTCTACTCAAGGCAGAAATGACGTTTAAAACACAGTTGGCCAGAGGGCAGGCAGGAAAATGTAGTTTCTTAAGTTGTTAAGAGTAGCATAGTTTTTATCGCCAGttataatttttcttttgatagattttttgtttatagTGTCTGCTAGAGAGGAATTAGACTGAGAAATGTAGTTGTTTGAGTAAGTGAATGGTCAGCGGGTAGGTATAGCAGGAGCAGAGGTCAGTGGTGCTAAAACGGAGGTGGATGTTGGAAACTGGACACGTAATTTGAGAGAGATTTAGTGAGGTGAATATGCTAGAGGTGCTATGAGGATGGATGCTTGTGCACGTTGTTGACCTTGACCCACTCACTTCCTCATTCTTTTGAATAGAAACGGAATTAAGTTtgttaaatattcatttaaatgtagTCCTGCACTGAATGGAACTAATTATTTGTTGATATGTAAACACTATTTCAATATCCTGtctaaaattacaatttaatgCAGCTGACTGATTCAGTGTATTATATTCATGTATTGCTATGTGCAGAAaccaacgcacacacacacacacacacacacacacgctcactcactcactcacttatagTCAAGGTGTCTGAGTGATTGAGTGAGCACAGAGATGTGAGCTTTAAAGATAgcagtgtgtttaagtgtgtgtgtgtggggggggggggtctctACACTAGCAGAACTGAAGGAAGGTGGTATTTTAACAGCAGGCCTTGTCGGCAGGAGTAAAATCCGCTTTGTTAATCAGCTATTACCGCAAGTACACTGACCTTTACACTGACCTTTCTGCACTCTTAATAGTGCTCGACGCTCATCTGTCGGACAGTCTGTGTGACTCTTTGttgcattgtcctgttgttCGTGTCATATCCAGAGTTCCATCAGGCCCCTAAGAAATAATACTGTCTTTTAGCACTGAGTTGTATGTTCATAAAAGTCTAAAACTAGATAATGACTTCTAGACATGTGTTTAGTATCTCAAACAACTGCTGTGACTACTATCAgctgcattaataaaataaatcactcgTTTGATTGGTT

Function

symbol description
gfap Predicted to enable structural molecule activity. Located in cytoplasm and type III intermediate filament. Is expressed in several structures, including anterior neural keel; nervous system; neural tube; neuronal stem cell; and optic vesicle. Human ortholog(s) of this gene implicated in Alexander disease. Orthologous to human GFAP (glial fibrillary acidic protein).

NR:

description
glial fibrillary acidic protein

GO:

id name namespace
GO:0045098 type III intermediate filament cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K05640 GFAP; glial fibrillary acidic protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251110.3 True 3772 mRNA 0.45 9 16155230 16172380

Neighbor

gene id symbol gene type direction distance location
map3k3 map3k3,LOC107674169,LOC107570753,LOC107658467 coding upstream 19856 16090023 ~ 16135374 (+)
limd2 limd2,LOC107721965,LOC107674139,LOC107658411 coding upstream 74536 16046254 ~ 16080694 (+)
LOC103033944 LOC103033944 coding upstream 115018 16037808 ~ 16040212 (+)
rnf113a rnf113a,LOC106606873,LOC107693494,LOC106601610 coding upstream 178197 15965965 ~ 15977033 (+)
LOC103025681 NA coding upstream 407507 15741172 ~ 15747723 (+)
LOC103035750 kcnh6a,kcnh6,LOC108427397,LOC107674162,LOC107570755,LOC107583039,LOC107658465 coding downstream 12628 16185008 ~ 16267197 (+)
meioc NA coding downstream 238135 16410515 ~ 16424926 (+)
LOC111194175 NA coding downstream 769924 16942304 ~ 16946439 (+)
LOC111194187 NA coding downstream 775880 16948260 ~ 16951992 (+)
LOC103039111 tiam1b,LOC108411134,LOC107705640,LOC108278361,LOC107670130,LOC107669892 coding downstream 2001696 18174076 ~ 18215882 (+)
G10882 NA non-coding upstream 172652 15979023 ~ 15982578 (+)
G10877 NA non-coding upstream 204054 15950934 ~ 15951176 (+)
G10865 NA non-coding upstream 233800 15863842 ~ 15921430 (+)
G10843 NA non-coding upstream 401962 15751508 ~ 15753268 (+)
G10826 LOC108427385,LOC100528069,LOC108427383,LOC106526789,LOC108274011 non-coding upstream 441830 15671611 ~ 15713400 (+)
G10903 NA non-coding downstream 9570 16181950 ~ 16215622 (+)
G10909 NA non-coding downstream 130323 16302703 ~ 16304584 (+)
G10910 NA non-coding downstream 134648 16307028 ~ 16311890 (+)
G10913 NA non-coding downstream 141439 16313819 ~ 16316489 (+)
G10914 NA non-coding downstream 144248 16316628 ~ 16318015 (+)
LOC107197663 NA other upstream 104305 14801118 ~ 16050925 (+)
ddx42 ddx42 other upstream 119946 16011694 ~ 16035284 (+)
G10879 NA other upstream 194852 15952846 ~ 15960378 (+)
G10838 NA other upstream 385987 15758762 ~ 15769243 (+)
G10825 syt5a,LOC108427381,LOC107658481 other upstream 499892 15650282 ~ 15655338 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other downstream 52341 16224721 ~ 16300667 (+)
LOC111194200 NA other downstream 967045 17139425 ~ 17143348 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 3240427 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 4790669 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 4803824 20976204 ~ 20976277 (+)

Expression


Co-expression Network