G10826 (LOC108427385,LOC100528069,LOC108427383,LOC106526789,LOC108274011)


Basic Information

Item Value
gene id G10826
gene name LOC108427385,LOC100528069,LOC108427383,LOC106526789,LOC108274011
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15671611 ~ 15713400 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14630
ctcgggtcagGTTTATTAATCAGATTCAGTCATGACTGAAGTCAAGCAGCATTTACATTCAGAGGCACAAAACTTGGCCATCAACACTTACAACATGGAACTCACTATGATGTTTCCATTCAACAGCTTAAACTCTTGTCTCAAACACTCATGCAGAATTAGAACATTTTAGTACGAATTTGAACATAGGTGGACTGTGCAAGCAAGGGGCGAAGACTCGGGTCAGGTTTAGCTTTTGCCCCCCAGGGTGTGCTTGTCGAACAGGTATTCGGCCATCCTGTTGTTGCCGGCATCCATCTTGGTCAGGTTGGTGATGTGGTCACCCAGCTTCTTGATGGCCTCCACCTGCTCATTGAGGTAGTGGGTCTCCAGGAAGTCACACAGCTGttgaagtaaaaaaagaaaattttaaaatgaatgccATGAACTAAAAGCTATTGAGCAGGTAGCACTGAGAGGATACCATTTGGTTAGTTGCCAATCTTGAGTACACAGTGCTTAGTGTTTGCGTGGTCTAGATTCAAGCCAAGTGTAGAGGTGGAATAGTTAATTGAGGGGTTGCAAAGGGTTGTGTGTTCTATTACATAAGTACCATCATGTCTCAGAGCAGCTATTCATTCACATGGGTGTGGGCATGTACAtgtttactcaaaaaaaaagaacagcaacTTACATGAGGGTCACCCTTCTCAGAGGCAATCTTGTGCAGGTCCAGCAGAGCCTGGTTCACGTTTTTCTCCAGCTGCAAAGCACACTGCATGGCCTCCAGTCCAGTTCCCCACTCATCACGCTCAGGTTTCTAATGGGAATAATGGGAACTTGATATCCTGGAGGAAGATACGTCCACCTCTCTTGTTCTGGAAGGAGAGGAGCTTCTCTGCATGTTCTTGTTCCTCATGGCTGTTCTCCTTGAAGAAGTGGGCAAAACCTTCAAGGGCTACATCATCCCGAGAGAAGTAGTAGGCCATGGAAGTGTAGGTGTAAGAGGCGAAGAGCTCCATGTTGACCATCCTGTTGATGGCAGCCTCGCAGTCGCGGTGGTAGTTCTGGCGGACCTGAGAGTTCTCCATTTCGGCTGATTTTCTCCTTTTTATTATCAAAAcgtacaataataaaaatctatACGACGGTCGTCGAAGTCAAAGGAATGGTGCGGGACGAGGAAGAAGTTCCGTTCAATCACTGTTGAAGCAAGAACTCCTTGTAAGTCTTCCCAAAGCTGTGAGGTTAGAGCTCTTTGTcctctgtatttatattttccc
>TU14633
GAGGGaccgactacacactgatgatgaATGAAcgcaattacaattatgcttaaTTGTACaaataatagaaaaagaaataccccactgttttactgtaataacacacattttataacacacacaagtttcagttcaaaatgtttaTTCATCAGATTCAGTTACAATTTAGTGTTATAGACATCCACCATCACCTTGCTGAAAGAACAGAGAATGCAAAATAAAAGATGGAGCTACTCCACAACTCAATCCTGCAGTTTATCTTAGATGATTTCAGACTTCAAGCGCAAAGTATGTGGATCTGATGAAGTCTGGAGCTGGGTTTAGCTCTTGCTGCCCAGGGTGTGCTTGTCGAACAGGTACTCTGCCATCCTGTTGTTGCCGGCGTCCATCTTGGTGAGGTTGGTGATGTGGTCACCCAGCTTCTTGATCATCTCCACCTGCTCGTTCAGGTAGTTGGACTCCAGGAAGTCACACAGCTGTTGGGTAAAGGGAGGATAATGATTAGGTGGAGGTCAGGAACCATAAACATAGCACATTAACCTGCAATCCTGTGAGCTTCTTTTTTCTGACTTTTGGCAGCTTTAGTGCTGCAGTAAGTCTTAATGAGTCTCAACCTGCCTTCATTAAGCTCTAATCAGCATTTGTAATGACCAGGGCTTTATCATAATTTCATACTACACACTAATGCTACAAAGTATATACTATGTACTAATCCTAATAGTGTGGATTTGGTAGTTTAATACACACAATATCACAGTACTGAGAGCAGGAAGTGATAAAATCTGGCTATTTTAACATACTGTACTTCAGTGCAAGATATCCAGAAGTTGTATTATAGCCCCGATTGTAACCACACTCAAAAAACAACAGGCCTGTATCATGGAAATTTGAGTATCCTCAACTTTGAAACTGTTATTAATACTACATACCTAAAGTGAACCTCAAAACTAGTCATTGTTAGTGATTAATATGCAGTTGGGACGCATTCCATGTTTCTAACTGGCCAGCTGTTCAATATGCTGAATGTTTTATAGATTAGAGAAGAGAGAATTCCACCAAATTTTCCAATTATTCTTAATAAGTAAAAATGGTGCTTCTTTGAGGGATGCTCCAAAAGTAGGAGAACCAGTAACTGTGACTGTGGAATGATATGAATGAAGTCGTTAAACTAAACATTTGATACTGTATGTCATGCCACTTGTAAATGACAGGATGATTTATAAACTGACATGCCATgacaattccagccagacaCCATCGGTCACAATTACTACTAATCATTACCTCCAACTGCACTGTCCACaacttcaaaaaaatttaatttccaATCCATCTGGTGCACATTATCAGGCCTTGCTCGATAATtcaaactctgataattcatGTTACCATGTCATGAGCATGCTGGTCAGtgctcaacctcactcacaagataatacctaaCTTATACATGTGTTGGCATTCCCAAGCCGTCCCTTGTGGTAACTTTTGACATGTTATGCCATTATATGTTCAATTTATTGACCTTGATAACCATGTCATCTAGTCAATTCCCAGAAAATTACCTCAGataaaattaagttttaaaaaatgaagatcCTCATCCCTGacgctattttttttttttttactttttgaacacCATTACTTACAAATATTTGTCACTGAACCATATGCAGACATGTGATTCAAAAGATTAAGATTCACAGGTCATAAAACTCACATGAGGGTCACCCTTCTCTGAGGCGATCTTGTGCAGGTCCAGCAGAGCCTGGTTAACTTTCTTCTCCAGCTGCAGAGCACACTGCATGGCCTCCAGTCCAGTTCCCCACTCATCACGCTCAGGTTTCTGATGGAATAAAGAAATTAGGGATTAAGGATGGTTTGCAACCAGCATGATTACCTATTTTTTATGTctcaaacgaaaaaaaaaattggattgaACATACCTTGATATCCTGGAGGAAGACACGTCCACCTCTCTTGTTCTGGAATTCCAGAAACTTCTCTGCATGCTCACGCTCCTCATGGCTGTTCTCCTTGAAGAAATGAGCGAACCCTTCGAGGGCTACATCATCCCGAGAGAAGTAGTAAGCCTGTAGAGAAATAAGTAAGGAAATGAGGATATGGAGATTGGCAGATAAGCAGTTCTAGATTCTTGCTACTTCCAAATACAAGCAGATAACCAACTCACCATGGAGGTGTAGGTGTAAGAGGCGTAGAACTCCATGTTGACCATCCTGTTGATGGCGGCCTCGCAGTCGCTGTGGTAGTTCTGGCGGATCTGAGAATTCTCCATTTCGGCTGATTTTCTCCTTTTTATTATCAAAAcgtacaataataaaaatctatACGACGGTCGTCGAAGTCAAAGGAATGGTGCGGGACGAGGAAGAAGTTCCGTTCAATCACTGTTGAAGCAAGAACTCCTTGTAAGTCTTCCCAAAGCTGTGAGGTTAGAGCTCTTTGTcctctgtatttatattttccc
>TU14637
GAAAACGttactgtattgtttgtttttgtattgcATTTTGTAGAATTAATTCATTAGAACACTCCAACAACATGTAAACATCTCAAACCAGCCATGGCTATAAAAAATAGTAGCCTTGctccaaaaacaaacacaacaagGTACATTTCCAgctcaaaatGTTTATTAATCAGATTCAGTCATGACTGAAGTCAAGCAGCATTTACATTCAGAGGCACAAAACTTGGCCATCAACACTTACAACATGGAACTCACTATGATGTTTCCATTCAACAGCTTAAACTCTTGTCTCAAACACTCATGCAGAATTAGAACATTTTAGTACGAATTTGAACATAGGTGGACTGTGCAAGCAAGGGGCGAAGACTCGGGTCAGGTTTAGCTTTTGCCCCCCAGGGTGTGCTTGTCGAACAGGTATTCGGCCATCCTGTTGTTGCCGGCATCCATCTTGGTCAGGTTGGTGATGTGGTCACCCAGCTTCTTGATGGCCTCCACCTGCTCATTGAGGTAGTGGGTCTCCAGGAAGTCACACAGATGAGGGTCACCCTTCTCAGAGGCAATCTTGTGCAGGTCCAGCAGAGCCTGGTTCACGTTTTTCTCCAGCTGCAAAGCACACTGCATGGCCTCCAGTCCAGTTCCCCACTCATCACGCTCAGGTTTCTAATGGGAATAATGGGAACAATGGGAACTAAAAATTTAGAACATGTACACAGACAGATGATGGTATTTAAAACATACAcagcttagtttttttttacaatattttgacaGCAGCTACCTTGATATCCTGGAGGAAGATACGTCCACCTCTCTTGTTCTGGAAGGAGAGGAGCTTCTCTGCATGTTCTTGTTCCTCATGGCTGTTCTCCTTGAAGAAGTGGGCAAAACCTTCAAGGGCTACATCATCCCGAGAGAAGTAGTAGGCCTAAAAATGACCATGGAAGTGTAGGTGTAAGAGGCGAAGAGCTCCATGTTGACCATCCTGTTGATGGCAGCCTCGCAGTCGCGGTGGTAGTTCTGGCGGACCTGAGAGTTCTCCATTTCGGCTGATTTTCTCCTTTTTATTATCAAAAcgtacaataataaaaatctatACGACGGTCGTCGAAGTCAAAGGAATGGTGCGGGACGAGGAAGAAGTTCCGTTCAATCACTGTTGAAGCAAGAACTCCTTGTAAGTCTTCCCAAAGCTGTGAGGTTAGAGCTCTTTGTcctctgtatttatattttccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14630 False 1262 lncRNA 0.43 4 15704240 15713400
TU14633 True 2491 lncRNA 0.51 2 15681075 15713400
TU14637 False 1233 lncRNA 0.37 4 15671611 15713400

Neighbor

gene id symbol gene type direction distance location
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671 coding upstream 393189 15272744 ~ 15278422 (+)
LOC103046681 LOC108427369 coding upstream 537242 15117166 ~ 15134369 (+)
polr3d polr3d coding upstream 649790 15014840 ~ 15021821 (+)
rcn3 rcn3,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding upstream 666759 14996132 ~ 15004852 (+)
LOC103043011 tspan4b,LOC108427360,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108280533 coding upstream 735465 14925107 ~ 14936146 (+)
LOC103025681 NA coding downstream 27772 15741172 ~ 15747723 (+)
rnf113a rnf113a,LOC106606873,LOC107693494,LOC106601610 coding downstream 252565 15965965 ~ 15977033 (+)
LOC103033944 LOC103033944 coding downstream 324408 16037808 ~ 16040212 (+)
limd2 limd2,LOC107721965,LOC107674139,LOC107658411 coding downstream 332854 16046254 ~ 16080694 (+)
map3k3 map3k3,LOC107674169,LOC107570753,LOC107658467 coding downstream 376623 16090023 ~ 16135374 (+)
G10822 NA non-coding upstream 384876 15285715 ~ 15286735 (+)
G10720 NA non-coding upstream 439696 15193798 ~ 15231915 (+)
G10706 NA non-coding upstream 507776 15136544 ~ 15163835 (+)
G10711 NA non-coding upstream 558963 15108977 ~ 15112648 (+)
G10699 NA non-coding upstream 582514 15087928 ~ 15089097 (+)
G10843 NA non-coding downstream 38108 15751508 ~ 15753268 (+)
G10865 NA non-coding downstream 150442 15863842 ~ 15921430 (+)
G10877 NA non-coding downstream 237534 15950934 ~ 15951176 (+)
G10882 NA non-coding downstream 265623 15979023 ~ 15982578 (+)
G10903 NA non-coding downstream 468550 16181950 ~ 16215622 (+)
G10825 syt5a,LOC108427381,LOC107658481 other upstream 16273 15650282 ~ 15655338 (+)
G10510 smg1,LOC107729485,LOC107583093 other upstream 1264170 14404403 ~ 14407441 (+)
LOC111193423 arl6ip1,LOC107658451 other upstream 1272916 14314792 ~ 14398695 (+)
G10503 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 other upstream 1300093 14361865 ~ 14371518 (+)
LOC103036470 NA other upstream 1349751 14316407 ~ 14321860 (+)
G10838 NA other downstream 45362 15758762 ~ 15769243 (+)
G10879 NA other downstream 239446 15952846 ~ 15960378 (+)
ddx42 ddx42 other downstream 298294 16011694 ~ 16035284 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other downstream 511321 16224721 ~ 16300667 (+)
LOC111194200 NA other downstream 1426025 17139425 ~ 17143348 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1096152 NA non-coding NC_048576.1 CM023230.2 62489174 ~ 62495463 (+)