LOC103043011 (tspan4b,LOC108427360,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108280533)


Basic Information

Item Value
gene id LOC103043011
gene name tspan4b,LOC108427360,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108280533
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 14925107 ~ 14936146 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251046.3
cgagaaggAGTCAGAGAGGAGGACTGGTAACTACATCTGGAACTTATTGGGAGCAAGGctgagagcgagcgagagagagagagagagagaccgactgagcaagagagaaagaaaaaataagttcCTGAAGAATGAAAAATCAACTACTGGGAATTAGGAGGCTTGAACAAAAAGGTTAGTTCTTCATATCATGAAATAGGAGTTCGCTGGATCAAACATTAATGACAAGTTTTCTAATGTGAAGAAGTCATTTTAACGAGGAACAAAAGGAACTTCAGAGAAGAAACAactaataaaagaagaaaagaacagaaagtaAAGTGGCTAGCATCCCATAAAGTGAAGTGGCATTCCTACAAAACAGGAAAATACAGATCATCTCATCTCCTGCAGGACTGAGGGGGGAGCAACAACAAAAGCAAGCCAAAGGTCAAGGCAAATACAACGAAAAGGACCAAGAAACAAAAGAACTGTGGAATTGTAGATCTGACACAGACTTACTGTCATCAAAAGAGACATTTTAGAGAAAGAggagcaaaatccacaaaaaatccTGAAAACTTCTTGAACATTTTCCAAATTCCTCTCAGACGCTCTCCTGCACTCCACCTACCACCAGGATGGCTGTGTCACGAGGTTGCCTGTGTTGTGTGAAGTACCTCATGTTCGTGTTTAACCTTATCTTTTGGTTGGGTGGGTGTGGCCTGTTTGGAGTAGGGGTGTGGCTTTCCTTCACCCAGTCACAGTTCTCCTCCCTGCCCCTGTCCTTTCCTTCGCTTTCTGCTGCCAACCTGCTGCTGGTGGCCGGTGGCGTTACAATGGTGACGGGGTTTCTGGGGTGCCTGGGCGCCCTGAAGGAGCAGCGTTGTCTGCTGATGACGttttttgtgatccttctgctgctgtttctcactgAAGTGTCGCTGATTCTAATTCTGAGCATCTACCACAAAGAGCTGGACGAAAAAGCTAAGGATGATTTGGTAAAAGGGATGAAGGACTACAACAAAAACAACGACCTGAAGGACTCCTGGGACAACATGCAAAGAATTTTTAAATGCTGTGGAGTGAGTAATCACACTGACTGGCACAACATCACTGGAACACCAGGTCAGCCCCCCTCATCTTGCTGCAGGCCTGGCACTAAACCCTGCCACCTATGGGAAGAGCCGTGCTATGAGAAGGCCAAGAATTTTCTCCTCAGCAACATCACATCTGTGCTGGTGTTTGGCGTCTGCCTTGGCATTGTCCAGATCTTAGCCCTGGCTTTCTCCATGCTGATGTACTGCCAAATCTTGCGTGCGGAAAAATACATGGACTGACCTGGCGATGGCCCAGCGCTGCCTGGGGCCTGGAGTTAACCGGGAGAGTGTGTAACAGTTAGGAGTGAAATGTACTATTTTAGAACTCAGCCAaacttcagcttcagcttcaagACTCAAGAGTGCTTTGAATTACTGAGGCAGCTGGATATTCTTACATGCATCagttttgattcttaaaattgcATGTTGTGAAAGTGAGAGATATACTCTATGGCTTGGTTTCTCAGAgggagattaagcctagtcctggaaTACACAACATTCTGAATGAAGATTCCTTATTTAAAGCCAAATATAATCCATGACTAGACTGAATCTTTGCCTGGAAGCCTGGTCAAACGTCCAAACAAATGTAGACAGCTGCTCTTCtagtgtttttctgaatatatgTGTATTAAAAGGGTGCCTATAATGTACTGGGAATGCTTTATATTAGGCTGTTGGGAGAATCTGATGCATTCAGGCAAGTTATGGATCACAAATGCTTACTCAAGCTCATTCCAAAAGTACCCTATGGAGCACTATCATTCCAAACAACACAGCTCAGTACTGGTGGCTTTATACCACCCTAGCTTAGGCTTATGTTCTGACAGTTCTCCAGAGTGCTCTGTTCTATTGGTCAATGCTTTTCTACAGTGCTGTGAGAAATTGAACAAATCAATGATGCCATAGAATAACTATATTTGGTTCCTctacaatttaaacattttaaaaaagattgAAGAAGCCCAAGCCAAAAAGGTTCTTCTTTGTGAAGGTCCTCTTTTGTCAAAATAGTTCTACTATGGTGTCGCCCAAAACACTTTtgtagcatctttatttttcagactgTAAAATATTCGCCTACCAGATAGGTTTGTTTGGatatcagccataacattagcaccactgACAGGAGAATGTAATCTACAGCTTTGGAA

Function

symbol description
tspan4b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: tetraspanin-4-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251046.3 True 2245 mRNA 0.43 8 14925107 14936146

Neighbor

gene id symbol gene type direction distance location
LOC103042699 NA coding upstream 5371 14914028 ~ 14919736 (+)
LOC103042394 NA coding upstream 16324 14905488 ~ 14908783 (+)
LOC103037400 LOC108427346 coding upstream 572342 14350512 ~ 14352765 (+)
LOC103036166 LOC108427338 coding upstream 683032 14232229 ~ 14242075 (+)
LOC103039204 NA coding upstream 694124 14225183 ~ 14230983 (+)
rcn3 rcn3,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding downstream 59986 14996132 ~ 15004852 (+)
polr3d polr3d coding downstream 78694 15014840 ~ 15021821 (+)
LOC103046681 LOC108427369 coding downstream 181020 15117166 ~ 15134369 (+)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671 coding downstream 336598 15272744 ~ 15278422 (+)
LOC103025681 NA coding downstream 805026 15741172 ~ 15747723 (+)
G10632 NA non-coding upstream 32245 14841481 ~ 14892862 (+)
G10643 NA non-coding upstream 44269 14879045 ~ 14880838 (+)
G10638 thoc6,LOC107729483,LOC107730738,LOC107689651 non-coding upstream 63430 14853662 ~ 14861677 (+)
G10639 NA non-coding upstream 67846 14856868 ~ 14857261 (+)
G10636 NA non-coding upstream 73628 14850143 ~ 14851479 (+)
LOC111194138 NA non-coding downstream 37185 14973331 ~ 14974000 (+)
G10695 NA non-coding downstream 110349 15046495 ~ 15047351 (+)
G10694 NA non-coding downstream 113243 15049389 ~ 15050887 (+)
G10698 LOC108427365,LOC108280300 non-coding downstream 116054 15052200 ~ 15055791 (+)
G10697 NA non-coding downstream 139194 15075340 ~ 15087193 (+)
G10510 smg1,LOC107729485,LOC107583093 other upstream 517666 14404403 ~ 14407441 (+)
LOC111193423 arl6ip1,LOC107658451 other upstream 526412 14314792 ~ 14398695 (+)
G10503 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 other upstream 553589 14361865 ~ 14371518 (+)
LOC103036470 NA other upstream 603247 14316407 ~ 14321860 (+)
G10450 LOC103035240,LOC108427335,LOC107732842,LOC107674167,LOC107563993,LOC107732871,LOC107658445,LOC107729508,LOC108280773 other upstream 761001 14117612 ~ 14164106 (+)
G10825 syt5a,LOC108427381,LOC107658481 other downstream 714136 15650282 ~ 15655338 (+)
G10838 NA other downstream 822616 15758762 ~ 15769243 (+)
G10879 NA other downstream 1016700 15952846 ~ 15960378 (+)
ddx42 ddx42 other downstream 1075548 16011694 ~ 16035284 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other downstream 1288575 16224721 ~ 16300667 (+)

Expression


Co-expression Network