LOC103042699


Basic Information

Item Value
gene id LOC103042699
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 14914028 ~ 14919736 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251045.3
CAACACAGCTTCCCCTTGAGCTTCTCCTTTTTTTCGACTTCAGCTTCATAACCTCACCAAATTGAGAGTAGTGACTACACCCTGGCACATGTCCAACGTTATCTATCGGCCTCCTGCAGCTACAGAAACGAACAAACTCGGAGTGATACACACCGAGAGTAAGATAGAGGGAGGGGGACAggcagagacaaagagaggcagagagagtgaATAtaggagtgagaaagagaggaagagagaggtaaGAGGATAGAGGTGCTAACTACGTGCGCGAGGCACTAGTATGACACGTGCAGATTGGATTTGGTGGCTGATGGCGATGGTGAgccaacacatacacacatgaagtcttcTTCTTTTCCTTACTCCAGAACAGCTGCTCTttgcgacagagagagagacacacacatcgagagagaaagagagagggactaAGAGGAAGAGAAGGGTTGTGTCTTTCCGGCCTAGATTAATGCAAGATTAGCCCTGTAGAATACAGCAGCGGGCTGGAGTCTGAAGAAGGAACTGAACACAGCAACTCTGAGAAGAAGACAGCAAGCGATGGCTGTTCATATGAACccaacacagcaaaaacacagataaaagtGATAACAATTCAATTAGACGTCACACTTCTGGCAGCAaccaaaaaacatttcaaatacCATCTGActcacaaaatattttttttctgagaaaaGAGCTGCTACTGTGATCCAGTGTGTGTCACTGAAACAGGATGTGCGGCCTACGTATTTTTTTAAGCGCCTTGCTTTTCTCGCTGGCCCTTGGACCTTATGTCATGCTTCTGCATgctcagcatacagagaggccTGATAATGATGTCTCAACTGAATCATCTTTGGTGACTGGGACTGCCAAAGAGTCTACGGATTCTGAGGATTTGGATGTAACAGAAAAGCCTGCAGATGCTACTTCTGCTCCTGAGATTGTGGAATCTACAGACCCTATAACAGTACCCAACAGCAGCACAATATCAGAAACAGAACCTCCGACAACATCTAGTGAAGAACTTACGACCACCACGGAACCTCCAGTCACAACTCAGACAACCACAACTATGGTAACCACCATCATGATGACCACAATCGTGATGGAGCCTAGCACAGCGATGGTCACAGAGTTTACTGATCCTGAGTCAACTACTGAATTGCTGGAGGACACCACTGTAGCATATGAGGCGATCACTACTGCCACTACTCCACCACCAGCTATACAAACAACTGCTCCGACAACTGTACATGAAAGCACAAAAGCATCAAAGACCACTTCTACTCCAATAATGGACACAGAGAAGATAGAAGAACCCACACCAAGCACCACAGAAATCACAGACATGATCACCACCCTGCCTCCGATAATCCCAAACTCATTGGAGCCTATTGATATTACCATCAAGGACACTGAAGAACCCAGCACAAGCACATCAATATCAACTAGTAGTGAAGCAATTACAACTGGGATTGGAATTTCTGGGACTGGCATTAAAAGCACTGATCCGGACCCAGGTCCTAACTGGCTCCTCTATATCATCATAGCTGTGGCCATTATCTGCATAGCATCGGCCTTTTGCGTCATCATCTTTGTACGACGCAAAAAGAAAAGCCGCTCACAGCGCTTTGGCTCTGGCTATATGAACGGCCGGAACCAGAGGTCCAAGAAGAAGAAAGGAGAGGAGGATGCCTGGGCTGGGCCAGTGAATCTAGAGGGAGGGGACAAAGCTGAATGTGAGGGTCCAGAAGAGCTGGGAAAGGGAAGTGATAAACATCCAGACGGGACAGACTTAACGCTTAGCACGTTCGTGGCTTCGGAGGCAAATGGCGGAGTTGGACGACCTGGATCAATGGAGGCTCAGAAATGGGAAGAACAAGAACCTCTTCTGTATATCGATGAGGATGCGAAAGCAGAGgcaaaagcaaagcaaaaagaAGGGGTGGAGAAGGAAAAGGAGGTGGCgcaaaaagaggaaaaagatgCCAATGGACAGACTGCAATGAAGGAGGTTAAGCAGAATGGAGGAGAAGCTTTTTGCCTAACCACAGCTGTGTGAAATGAACTCTTTTCTAATTAGCtaattatctctctctttggctgtttactttttgttttgtggGTCAGTGCTTCTCAAATTGGtccatattaaaacaaaaaactagaAGTAGGGTGTGTGGGATAACAAAGCAATGCTTTGCCTGTGGAAGACTAAGTATgagaccgaaatggctccctattaACTTTTTAGGGCAATATTAAGTATGTCGGCCATTTGTCGCAGAGTGAAATTCGAACATAACTTTAAGGGCACTATATCAACattattacagggtttattacAACATGGCCTTAAATAAAATGCGCTGTCTAATATATCAactatcacaaaaaaacaatatataaattattttatctgCATGTTTTAATATCTATGTGTTTAGCGTATTGTATGATAGGACACAAGAAccaattaaaaaagtaattacaatGCATAAATAAACTTGAAATAAGTCAATACTCACAGATAATAACTAACATAAACAATGCTTATTCAAATGTCTATTAGCATGGTTAGCTATGTATCTGCTAGTTCAGCTATCTACAACATTGATAGGACAAATTTCCAAACCCTTAACACTTGGTAGTTTTGTCCACCTGTTCAGAGTGCGTTTCTTGCAGAAAATTTCAAACACAAGCCGACCGATTTGGCATAAAACCATGGtaatttcccatttttctcctgTAGTTCATTAATGTAAGGCTTATGTTTCTAAAATGTGCACCATAACGGTCCGAGATTACTCAATGATTAATGATTATGCATGAATAGagcttttattaactttaatttGGAACTCAGTTCGAATGTGTACAAAattttaaacacagttcagCTGTGTATGTGACACAGTGGGCACATGTTAATGATGATGTAACGTCCAAGAAAACTTGTGTTTTCACCATTACTTAGAAAACTAAATAGTTTCTCGCTATATAGCGCAATACTAAAGAGGAAGCAGAGAATCATTTTGGTCACAGCCTGGCATTGCATTTCTAGACCAGGCCAACACACCACACTACCCCACACCATTAACAGAAAGATTTTTAATGCTTCACCACTTCAAATGAATGGTTTAAATGGACCCATAAGTAATGCCACAGAATACCTGTGTTTCTAACAGAGATGGAAATTGGAAAAGAGCATTTAAAAGACAAGTTAAGCTTTTTTGAGAGTATGTTGTCTGTCCTGTGTAACATCATTCAAAGAGGTAGGGcctgtttgagaaccactgtcaCCAATTATAATCTTGCAGTTTGGCCTGGGTATTGAAACTTTAATTTTGGAATAAGGCTGCTCATTGGCTCGTGAATAAGA

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251045.3 True 3391 mRNA 0.42 2 14914028 14919736

Neighbor

gene id symbol gene type direction distance location
LOC103042394 NA coding upstream 5245 14905488 ~ 14908783 (+)
LOC103037400 LOC108427346 coding upstream 561263 14350512 ~ 14352765 (+)
LOC103036166 LOC108427338 coding upstream 671953 14232229 ~ 14242075 (+)
LOC103039204 NA coding upstream 683045 14225183 ~ 14230983 (+)
LOC111194173 NA coding upstream 700068 14201351 ~ 14213960 (+)
LOC103043011 tspan4b,LOC108427360,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108280533 coding downstream 5371 14925107 ~ 14936146 (+)
rcn3 rcn3,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding downstream 76396 14996132 ~ 15004852 (+)
polr3d polr3d coding downstream 95104 15014840 ~ 15021821 (+)
LOC103046681 LOC108427369 coding downstream 197430 15117166 ~ 15134369 (+)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671 coding downstream 353008 15272744 ~ 15278422 (+)
G10632 NA non-coding upstream 21166 14841481 ~ 14892862 (+)
G10643 NA non-coding upstream 33190 14879045 ~ 14880838 (+)
G10638 thoc6,LOC107729483,LOC107730738,LOC107689651 non-coding upstream 52351 14853662 ~ 14861677 (+)
G10639 NA non-coding upstream 56767 14856868 ~ 14857261 (+)
G10636 NA non-coding upstream 62549 14850143 ~ 14851479 (+)
LOC111194138 NA non-coding downstream 53595 14973331 ~ 14974000 (+)
G10695 NA non-coding downstream 126759 15046495 ~ 15047351 (+)
G10694 NA non-coding downstream 129653 15049389 ~ 15050887 (+)
G10698 LOC108427365,LOC108280300 non-coding downstream 132464 15052200 ~ 15055791 (+)
G10697 NA non-coding downstream 155604 15075340 ~ 15087193 (+)
G10510 smg1,LOC107729485,LOC107583093 other upstream 506587 14404403 ~ 14407441 (+)
LOC111193423 arl6ip1,LOC107658451 other upstream 515333 14314792 ~ 14398695 (+)
G10503 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 other upstream 542510 14361865 ~ 14371518 (+)
LOC103036470 NA other upstream 592168 14316407 ~ 14321860 (+)
G10450 LOC103035240,LOC108427335,LOC107732842,LOC107674167,LOC107563993,LOC107732871,LOC107658445,LOC107729508,LOC108280773 other upstream 749922 14117612 ~ 14164106 (+)
G10825 syt5a,LOC108427381,LOC107658481 other downstream 730546 15650282 ~ 15655338 (+)
G10838 NA other downstream 839026 15758762 ~ 15769243 (+)
G10879 NA other downstream 1033110 15952846 ~ 15960378 (+)
ddx42 ddx42 other downstream 1091958 16011694 ~ 16035284 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other downstream 1304985 16224721 ~ 16300667 (+)

Expression


Co-expression Network