G10643


Basic Information

Item Value
gene id G10643
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 14879045 ~ 14880838 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14362
CTGTGTGCTGAGCTGGACGATGCACTGCGGTGCTTTCGGCTCTTTGTGGGTGGAGGAGTCTCATTTTCACTGcctttcctcttcctctttgaCACCTGTTTGTCCTCAGATgaactaaaattaaacaaaaataagaccACAAAGAGCCACACAAAATCcgagaaatctgtttatttacttttaagaAGACACGGCTCACCTTCCTTGGTCACTCTGTACTGATTCTTCCcttttctttttcttcttcttgtttttctttttctctctgcgaGGAGAAGGTGAGGGACTTTCTGAGCTGTctctgcttttgtttttctttcttttcttctttcggCTCTGTTTGCGAGTAGAGGAAGAGTCAGACTCCTCAGAGTCTTCAATTATCTGgtatttctgctgctgctgtctctcACGCTCCAATCTTTCctgctctctcttctctttttcacgCTCTTTTCTGTCTGGGTGAAAAGAGGAGCCATCCACGTAGTCCGAGCCGATGCCAAAAGCTTCTCTCAGCCGGTCGTTTTTCTGCTGGTTAGCGGCAGCAAGTGCGTGGGTCTCAgtcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14362 True 570 lncRNA 0.37 4 14879045 14880838

Neighbor

gene id symbol gene type direction distance location
LOC103037400 LOC108427346 coding upstream 526280 14350512 ~ 14352765 (+)
LOC103036166 LOC108427338 coding upstream 636970 14232229 ~ 14242075 (+)
LOC103039204 NA coding upstream 648062 14225183 ~ 14230983 (+)
LOC111194173 NA coding upstream 665085 14201351 ~ 14213960 (+)
LOC103034911 LOC103034911,LOC108280870,LOC108427336 coding upstream 766848 14101866 ~ 14112197 (+)
LOC103042394 NA coding downstream 24650 14905488 ~ 14908783 (+)
LOC103042699 NA coding downstream 33190 14914028 ~ 14919736 (+)
LOC103043011 tspan4b,LOC108427360,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108280533 coding downstream 44269 14925107 ~ 14936146 (+)
rcn3 rcn3,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding downstream 115294 14996132 ~ 15004852 (+)
polr3d polr3d coding downstream 134002 15014840 ~ 15021821 (+)
G10638 thoc6,LOC107729483,LOC107730738,LOC107689651 non-coding upstream 17368 14853662 ~ 14861677 (+)
G10639 NA non-coding upstream 21784 14856868 ~ 14857261 (+)
G10636 NA non-coding upstream 27566 14850143 ~ 14851479 (+)
G10629 si:dkey-16l2.16,LOC108427354,LOC107729502,LOC107658507,LOC107583079,LOC104923366,LOC103393468,LOC104967543,LOC101473432 non-coding upstream 43928 14831261 ~ 14835117 (+)
G10613 NA non-coding upstream 103345 14773718 ~ 14775700 (+)
LOC111194138 NA non-coding downstream 92493 14973331 ~ 14974000 (+)
G10695 NA non-coding downstream 165657 15046495 ~ 15047351 (+)
G10694 NA non-coding downstream 168551 15049389 ~ 15050887 (+)
G10698 LOC108427365,LOC108280300 non-coding downstream 171362 15052200 ~ 15055791 (+)
G10697 NA non-coding downstream 194502 15075340 ~ 15087193 (+)
G10510 smg1,LOC107729485,LOC107583093 other upstream 471604 14404403 ~ 14407441 (+)
LOC111193423 arl6ip1,LOC107658451 other upstream 480350 14314792 ~ 14398695 (+)
G10503 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 other upstream 507527 14361865 ~ 14371518 (+)
LOC103036470 NA other upstream 557185 14316407 ~ 14321860 (+)
G10450 LOC103035240,LOC108427335,LOC107732842,LOC107674167,LOC107563993,LOC107732871,LOC107658445,LOC107729508,LOC108280773 other upstream 714939 14117612 ~ 14164106 (+)
G10825 syt5a,LOC108427381,LOC107658481 other downstream 769444 15650282 ~ 15655338 (+)
G10838 NA other downstream 877924 15758762 ~ 15769243 (+)
G10879 NA other downstream 1072008 15952846 ~ 15960378 (+)
ddx42 ddx42 other downstream 1130856 16011694 ~ 16035284 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other downstream 1343883 16224721 ~ 16300667 (+)

Expression


Co-expression Network