LOC103042394


Basic Information

Item Value
gene id LOC103042394
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 14905488 ~ 14908783 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251044.3
GCATCAGCGTGGCAGAGATCGTCTACGCAAAAGAGGAAATCATGGAGGAAAGAGGAAGACATGAGATGAGAAGCATTGAgaagATAATAAAGATGAGTCCAGTGTCTCTATTGCTGTGGCTTGTTCAGCTTTTATCAGCTTGTGCTCTTCAGCACAATACAACATCCACGGATGGCCAGGACGAAGTCACAAGTAACCCACAGCTAACCATTGAATATAAGACGATTCATGCAGTTACTGCAACAACAGTGTCATCACCTGTAGAAGAGTTCCTAACAAAATGGACTCGAGATTCAACGTCCACCTTGCAACCATCAGTAACAAAACTTCATGCTAATACAGCGGAAGCCCAGAGAAGTTCTGCGAATGCAGAGGGAATGGAGAAATCAAGTAACACAACAAGCCACCCTGACCACACATTCGTGAGTCCTATCTTCTTCAATTCTACAAGAACAGCAAAGAAAAACATAGAAACAGGAACCAGGTCTACTCTTTTTACCACGGGATTCAAAACTGACCGCTTCACAAGTCAAAAAATGGTTTATACAGATCAAGCAACTGATGTAAACAACTGGGAAAGTGGAACGTCCCTTCAGACGAAAAACACAGTCCAAACAACTGACTGGATAGAGGAAAGAAGTGAGGCAACAGGGTCACAAATTGAAGCTGATGGCACCACATTGTCACTTGATAACTTGAGAAACAAGTCTGAAGAGACACAGAGTGATAAGGGAAGTTATAATTTGACATTTGCTCAACATAGTCAGGCACACACCACAGCAGCTCTTGCCACAACACCATATAAAGTGGACAGCAAAACAAGTCTTGCTAACAGCACCACTGGGTACACCAATGTTCTACGTTCTTCAAAGCATGGTGTGGGTGGTGAACTTACCACAGGTTATTATGTTGAAACAACAGAGGTGGTCAGTGCGACACAAGCCACATCTTCCAAAAGCGAATCTATATCTTCTGCTTCTTTGCTGAGTACAGAAGAACCCCTGGTGTCTAGCAGAAGTATGAACACAGTTTCAGCAGTATCTCCAGGCTCTGGTACAGATCAGACGACAAAAGAGAATGTAACCACGACTACACACAGTGTCATAGATACCACCTGGAAAGACAGTCCCACCATGCAAAACACAGAAAGACTCTCAGCCTCTTCATTAACTAGCGAAGGAAGTTACAACTTCACATCAATGGAACAACAAGATCAAACCACAGTAAATTACAACCCAACAAACACTGAGCTGGACAAGTATGATGGAAACCACACAACTCCTGGCAACAGCACAGTTGGGATGATAAATGCTTCATCAAAGAATGACTTAGATGGCCAAATGACGACTGGATACTACATCACAACACCCGTTACGCAATTCACGCCTTCAGAAGGCAAAAACATATCGATGCGGAACATGGAAGAACATCCAGTCTCCACCACAAGTGCAAACACAGCCGTTTTAGAAACATCTTCTCAAAGCACCACAAGAAACGTGTCCAGTGTCTCATACTCAACTGGTAGAGACAGAATGACTAGAACTGAGGCCACAACCACACCCAGTCTTTCACACTCAACAGCTTTTCCAGTCAATATTACTACAACACCAAATGACACACAGGTCACTAATAGGAACGTGTCCAGAGAGACAGATCAGCCAGTATGGACGAACTGTTTCAGCAACGAATCGTCATCCAAAACTCAACGCTCATCTAAGCTAATCTGTTTCATCACACTGTGGTGCCTGGGCATGACTGCTTCCATCTTCTTAGGCCTCACTGTGTTCCTATGGGTACGACTGTCTGTAGTGAGAAAGGAGGCAAAAAGAAAGTACAAGGGTGTTAAGTCCACAggtaaagagagacagagtctGTGGGCTACAAACACTACGCTTGCAGAAGAAAGAGTGGAATTCTGGTATGCCAATGGATCCACGCTGGAGGCAGACAAGAAAGCAAGGGAACAAGAAAGGGCAAAAAGGAATGGTAATGGTAAAAATGAAGGGAAAGGTGGTGATATGTGGATTCAGCCAAAGGTGACACCGCAGGACATTGCTGAGTTCTGGTACGCAAATGGACGAGAGAGAAATGAGGACAGGATGGAGACGCAACGAGAAGATAGTTACCTATAGAACAAAAGTGGACATTATTAAATGTCCACCTGAAGAAATTAAATATCTACTGTAGATagagactgtgtgtgttgggagacaaaaagagagacagcaattgatatatatatgtcaTTCACATACAATAATTGACCATAGACAACAATTCATAATGTACAAAAAAGACATACATATTAGCtatcatttttctgttttctctgtttgaatgtaaaGCACATCATGGCCCTGGCTTAAAACTTGCATATACAAAAATTCACTAACTAATTTACTCATCTTCAGCAGTTTTTACCTAAAACGCTTTTGGTCCTTTGCATCAATGACACTGTGTGTCTTTGTTTACCAGATTTAATTGAAAAATGCTGAAATATTCTAAAAAGTacattatgtttatgttttttttttatctatttccaTCACAGAttgtttcagtgttaatgttaacatAACCATTTAATTCTCAGAAAATGTATAGACATTATTTTACTGAGTAAAATAATGTACAATTTTGTACGTTTTTGTAACTAGATTTCTTAATgcttaatactgtatttatttgatgtagGAAATCCAGTgcaaatatgtatgtatttatatatacaggtagaaatgttcatgtttttaattatgttacTTTTTAAGACAAAAACATGAGTTGCACTGCTTTATTTCACAAATGCTTTCTCCACTGGCTGCTGGGAAGATTCTTGGTTTCAAGGGGTTAAACTTGGGTaagattttcagtttttttccagtATAAAGATTTGTTCAACTTGCAATGCCGGGATATACTGTATTCTTGTGTCCTCACACATAGAgagtcattttttaaagtgtatgtatCTTGGTTTAATAAACTAACTTTGAAATActccata

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251044.3 True 3007 mRNA 0.40 2 14905488 14908783

Neighbor

gene id symbol gene type direction distance location
LOC103037400 LOC108427346 coding upstream 552723 14350512 ~ 14352765 (+)
LOC103036166 LOC108427338 coding upstream 663413 14232229 ~ 14242075 (+)
LOC103039204 NA coding upstream 674505 14225183 ~ 14230983 (+)
LOC111194173 NA coding upstream 691528 14201351 ~ 14213960 (+)
LOC103034911 LOC103034911,LOC108280870,LOC108427336 coding upstream 793291 14101866 ~ 14112197 (+)
LOC103042699 NA coding downstream 5245 14914028 ~ 14919736 (+)
LOC103043011 tspan4b,LOC108427360,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108280533 coding downstream 16324 14925107 ~ 14936146 (+)
rcn3 rcn3,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding downstream 87349 14996132 ~ 15004852 (+)
polr3d polr3d coding downstream 106057 15014840 ~ 15021821 (+)
LOC103046681 LOC108427369 coding downstream 208383 15117166 ~ 15134369 (+)
G10632 NA non-coding upstream 12626 14841481 ~ 14892862 (+)
G10643 NA non-coding upstream 24650 14879045 ~ 14880838 (+)
G10638 thoc6,LOC107729483,LOC107730738,LOC107689651 non-coding upstream 43811 14853662 ~ 14861677 (+)
G10639 NA non-coding upstream 48227 14856868 ~ 14857261 (+)
G10636 NA non-coding upstream 54009 14850143 ~ 14851479 (+)
LOC111194138 NA non-coding downstream 64548 14973331 ~ 14974000 (+)
G10695 NA non-coding downstream 137712 15046495 ~ 15047351 (+)
G10694 NA non-coding downstream 140606 15049389 ~ 15050887 (+)
G10698 LOC108427365,LOC108280300 non-coding downstream 143417 15052200 ~ 15055791 (+)
G10697 NA non-coding downstream 166557 15075340 ~ 15087193 (+)
G10510 smg1,LOC107729485,LOC107583093 other upstream 498047 14404403 ~ 14407441 (+)
LOC111193423 arl6ip1,LOC107658451 other upstream 506793 14314792 ~ 14398695 (+)
G10503 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 other upstream 533970 14361865 ~ 14371518 (+)
LOC103036470 NA other upstream 583628 14316407 ~ 14321860 (+)
G10450 LOC103035240,LOC108427335,LOC107732842,LOC107674167,LOC107563993,LOC107732871,LOC107658445,LOC107729508,LOC108280773 other upstream 741382 14117612 ~ 14164106 (+)
G10825 syt5a,LOC108427381,LOC107658481 other downstream 741499 15650282 ~ 15655338 (+)
G10838 NA other downstream 849979 15758762 ~ 15769243 (+)
G10879 NA other downstream 1044063 15952846 ~ 15960378 (+)
ddx42 ddx42 other downstream 1102911 16011694 ~ 16035284 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other downstream 1315938 16224721 ~ 16300667 (+)

Expression


Co-expression Network