LOC103046681 (LOC108427369)


Basic Information

Item Value
gene id LOC103046681
gene name LOC108427369
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15117166 ~ 15134369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007251060.3
CACagaatacacacatatacacagacaTCACaccttcatacacacacatcagctGGACTGTTCAGAATCCAGTGCATCAGGTTTCCTACAAGAGCACACCATGGGAGTGGACCTGGAGAGGATTATTCAGTACATCAAACAAGGAGACCAAAAAAGTGTTCAAACACAACTGGACCGCTACAACACTGAGaactctcagtgtttcttcttCAATGTGGAGGCAAGGGAGAAGAGGAAGCAACGTGAGCTGGAGGAGtTCCGCAGGAATAAAGTGAGAGAGTATATTCCAGACTCTGATTCAGACTTAGGCtcagatgatgatgaggatTCGGATCTGGTGTTGAGGAGGcgtCTGGCCTCAGCCCTGATGTGGTTTATCCGGACGCAGCTGCAGCCTGGTGTTCTAAGGGTGTGTTTGCGGACCCTCCGAATCCTGTCACGTGACCGCCTGGCACTGGCCCCCTTCATCACAGACTCTGCCATCCTCACCCTTGCCCGCCTGGGTGGCATCAGCACCATGCCCATTCCTGGCCATGAGGAAGAGGACTGGATGGAGGAGAAAGATCCGTGGGGCTTTGCCTGTGGCTCCACCAGCTCTCAATCTGGATCCAAGGCCTTctctacagacacacacaaccaAATGCGAGAGGTCATCATAGAGACTCGACGCAGGTCCTACAGGGATGATGGTATATACAGTTCGTTGGTCAGAGGAAAGAGGGATGCCAGAGGAGAGAGGGACGAGGAGGGGGATGAGTGGTATGACGATGGAGAGGTGTGGAGGAAAGAGGCCATGAAGGCTCTCTGTAATGTCATTTACAACAGCCAGAGGGCGCAGGAGAGGGCCGGCCCCCTAAAGCTTCTCCCAGGCCTCTGTGATAAGCTCAAGGCCAGTATCCGCTCTGCAGCGCCACCCAGCGGTCAGTTCTATGACCTGCGGCTCCTGTTTCTGCTGACTGCTCTCCGCCTCGAGCTCAGGAAAGAGCTCCAGCAGGCTCGTGGTGTGTCCTTGCTGACGGTTCTCCTGGAGCAGTGTTTGGAGGTGCAGTGGGCAGAGGACTACGAGGTGGTCTCTGACCCCTCAGCTCCCCCTATCATCCGGGACGCCTCCCAGCGTGCCATCGAGATCCTGAAGATCCTCTTCAACATCACCTACAGCACCCACAGACAGGAGCCCGACGAGGAGGATGCTGCTCTATATCGCCACCTGGCTGCGGTGCTGCGCCACTGCCTGCTGTTGTCCTGTGAAGATGAAGACTTGGTAGAAGAACTACAGGGCCACACAGTGAACCTGCTGTCAGCCCTTCCTCTGCAGTGCCTGGACGTCCTTCTCTCTGTCCGTCTGTTCAACGGATCAAAGGAGTCAGGCGGCGTCAACATGGACTGTGTCCACTCGCTGCTGATGTTCATGGACAAGAGACTAAACAGAGGTCAGAAGCTGAAGGAGAAGCTGACtccagtgctgaactttctgaCTGAGAGCTGCAGGGCACACAGAGAAACTCGACGCTACCTCAAACAACAGATCCTGCCACCTCTTAGGGAGGTGGAACTGAGGCCAGAGCAGGGGGACACTATAAGGAACAAGCTGGTCAGACTGATGACTCACGTGGACACTGACCTCAAACACTGCGCAGCTGAACTTCTGTTTGTGCTCTGCAAGGAAaacgTGGGGAGGTTTGTGAAGTACACAGGTTACGGCAATGCGGCCGGACTGCTGGCAGCGAGGGGTCTGCTGAGTGGACGTGGACCCTCGTCTAAGCCACAGTACTCCAGTGACTCTGACTCGGACACAGAGGAGTACCGACAGGCCAGAGACAAAATCAACCTGGTGACCGGCCGGGTGGAGGAACAGCAGCCTGACCCCATGGAGGGAATGAccgaggaggagaaggagagggagGCGATGAGGCTCATGAGCCTGTTCAGCCGGCtctccagGGATAAGATCATCCAGCCGATGGGGATGTTATCCAACGGCCGGTTGGCGCCCCTGTGTGGCCATCAGAGGTTCAGCTGtatggaggaggaagaggaggaggaggagggggaggtaGACTTTGAGGATGAACTGGATTAGTACCGGaggcagagcgagagagagtttTGGATGGGTAGAGAAAAAGATTGATAGTTGAAGGAGGGAAAAGCAGctgaagagagaaaggaaagagagggagggctATCACTGTAAAACAGAGAGCCCTGAATACAGAGAAAATATTACAGGAATATATAAAATGcttggagatgcagatttatcAAATAACATTTAGTGATGTAAGTTCTgtaggcatgtgtgtgtgtatgtgtgtgtacatgtgtgaaggaaatattttataattttagagagagagagaaagagagagagagagagagagagagagagagcaggagatgCAGCAAAAGGGAAAGAGCTAGAGAGAAAACAACTGAGAGTGACAATAAGAACGAGaaacagtcagagagagagagagagaaagaaaggaagagaaagagagatgtggagagagagagagcagaagatGGAGCAAAAGGCAAAGAGCTGGAGAGAAAGCAACTGAGCGAGTGACAGGGAGAGTGAGCaacaggcagagagaaagggggatgctgaatgagaataaaataaagagaaagaatctgagagtgatagagagtaaaCAAGCAATAAGGATTCAGTGGATGGAGGGAGAACGATAGAAAAGAAGAGTAATACAAAATGAGATAatggaaaagcagcagcagagtaagagagagcaaaagagtgacacagagagagaataggACCATGAAAAGAAGAGAGTGCACGAGAgcttgagagagaaagagatacagaagaGAGGTAGAAGAATAAGATAAGGAGAAAACAGGTAACACGGTTAGAGGAAAATTAAGAgcttgagagagacagagaggagtaATGAATAGATAGAGACAACATAGAAGGAACACGAGGGGTGGAgaaggtcagagagagagaatgagagatatAGAAAAAAGAAGGGTTATCCTGGATGAATGAAAAGAATTAACGAGGAAaaagcagagtgagagagactaaagtagtgtaagagagagagaagctggaAGGAAGAGCAAAATAGTGACAGCGGTAGAGAGATAGAAATGGAGGGGGGATGGATGGCGAGAGGAGAAAAGTggtgga
>XM_022677225.1
ACagaatacacacatatacacagacaTCACaccttcatacacacacatcagctGGACTGTTCAGAATCCAGTGCATCAGGTTTCCTACAAGAGCACACCATGGGAGTGGACCTGGAGAGGATTATTCAGTACATCAAACAAGGAGACCAAAAAAGTGTTCAAACACAACTGGACCGCTACAACACTGAGaactctcagtgtttcttcttCAATGTGGAGGCAAGGGAGAAGAGGAAGtTCCGCAGGAATAAAGTGAGAGAGTATATTCCAGACTCTGATTCAGACTTAGGCtcagatgatgatgaggatTCGGATCTGGTGTTGAGGAGGcgtCTGGCCTCAGCCCTGATGTGGTTTATCCGGACGCAGCTGCAGCCTGGTGTTCTAAGGGTGTGTTTGCGGACCCTCCGAATCCTGTCACGTGACCGCCTGGCACTGGCCCCCTTCATCACAGACTCTGCCATCCTCACCCTTGCCCGCCTGGGTGGCATCAGCACCATGCCCATTCCTGGCCATGAGGAAGAGGACTGGATGGAGGAGAAAGATCCGTGGGGCTTTGCCTGTGGCTCCACCAGCTCTCAATCTGGATCCAAGGCCTTctctacagacacacacaaccaAATGCGAGAGGTCATCATAGAGACTCGACGCAGGTCCTACAGGGATGATGGTATATACAGTTCGTTGGTCAGAGGAAAGAGGGATGCCAGAGGAGAGAGGGACGAGGAGGGGGATGAGTGGTATGACGATGGAGAGGTGTGGAGGAAAGAGGCCATGAAGGCTCTCTGTAATGTCATTTACAACAGCCAGAGGGCGCAGGAGAGGGCCGGCCCCCTAAAGCTTCTCCCAGGCCTCTGTGATAAGCTCAAGGCCAGTATCCGCTCTGCAGCGCCACCCAGCGGTCAGTTCTATGACCTGCGGCTCCTGTTTCTGCTGACTGCTCTCCGCCTCGAGCTCAGGAAAGAGCTCCAGCAGGCTCGTGGTGTGTCCTTGCTGACGGTTCTCCTGGAGCAGTGTTTGGAGGTGCAGTGGGCAGAGGACTACGAGGTGGTCTCTGACCCCTCAGCTCCCCCTATCATCCGGGACGCCTCCCAGCGTGCCATCGAGATCCTGAAGATCCTCTTCAACATCACCTACAGCACCCACAGACAGGAGCCCGACGAGGAGGATGCTGCTCTATATCGCCACCTGGCTGCGGTGCTGCGCCACTGCCTGCTGTTGTCCTGTGAAGATGAAGACTTGGTAGAAGAACTACAGGGCCACACAGTGAACCTGCTGTCAGCCCTTCCTCTGCAGTGCCTGGACGTCCTTCTCTCTGTCCGTCTGTTCAACGGATCAAAGGAGTCAGGCGGCGTCAACATGGACTGTGTCCACTCGCTGCTGATGTTCATGGACAAGAGACTAAACAGAGGTCAGAAGCTGAAGGAGAAGCTGACtccagtgctgaactttctgaCTGAGAGCTGCAGGGCACACAGAGAAACTCGACGCTACCTCAAACAACAGATCCTGCCACCTCTTAGGGAGGTGGAACTGAGGCCAGAGCAGGGGGACACTATAAGGAACAAGCTGGTCAGACTGATGACTCACGTGGACACTGACCTCAAACACTGCGCAGCTGAACTTCTGTTTGTGCTCTGCAAGGAAaacgTGGGGAGGTTTGTGAAGTACACAGGTTACGGCAATGCGGCCGGACTGCTGGCAGCGAGGGGTCTGCTGAGTGGACGTGGACCCTCGTCTAAGCCACAGTACTCCAGTGACTCTGACTCGGACACAGAGGAGTACCGACAGGCCAGAGACAAAATCAACCTGGTGACCGGCCGGGTGGAGGAACAGCAGCCTGACCCCATGGAGGGAATGAccgaggaggagaaggagagggagGCGATGAGGCTCATGAGCCTGTTCAGCCGGCtctccagGGATAAGATCATCCAGCCGATGGGGATGTTATCCAACGGCCGGTTGGCGCCCCTGTGTGGCCATCAGAGGTTCAGCTGtatggaggaggaagaggaggaggaggagggggaggtaGACTTTGAGGATGAACTGGATTAGTACCGGaggcagagcgagagagagtttTGGATGGGTAGAGAAAAAGATTGATAGTTGAAGGAGGGAAAAGCAGctgaagagagaaaggaaagagagggagggctATCACTGTAAAACAGAGAGCCCTGAATACAGAGAAAATATTACAGGAATATATAAAATGcttggagatgcagatttatcAAATAACATTTAGTGATGTAAGTTCTgtaggcatgtgtgtgtgtatgtgtgtgtacatgtgtgaaggaaatattttataattttagagagagagagaaagagagagagagagagagagagagagagagcaggagatgCAGCAAAAGGGAAAGAGCTAGAGAGAAAACAACTGAGAGTGACAATAAGAACGAGaaacagtcagagagagagagagagaaagaaaggaagagaaagagagatgtggagagagagagagcagaagatGGAGCAAAAGGCAAAGAGCTGGAGAGAAAGCAACTGAGCGAGTGACAGGGAGAGTGAGCaacaggcagagagaaagggggatgctgaatgagaataaaataaagagaaagaatctgagagtgatagagagtaaaCAAGCAATAAGGATTCAGTGGATGGAGGGAGAACGATAGAAAAGAAGAGTAATACAAAATGAGATAatggaaaagcagcagcagagtaagagagagcaaaagagtgacacagagagagaataggACCATGAAAAGAAGAGAGTGCACGAGAgcttgagagagaaagagatacagaagaGAGGTAGAAGAATAAGATAAGGAGAAAACAGGTAACACGGTTAGAGGAAAATTAAGAgcttgagagagacagagaggagtaATGAATAGATAGAGACAACATAGAAGGAACACGAGGGGTGGAgaaggtcagagagagagaatgagagatatAGAAAAAAGAAGGGTTATCCTGGATGAATGAAAAGAATTAACGAGGAAaaagcagagtgagagagactaaagtagtgtaagagagagagaagctggaAGGAAGAGCAAAATAGTGACAGCGGTAGAGAGATAGAAATGGAGGGGGGATGGATGGCGAGAGGAGAAAAGTggtgga

Function

NR:

description
PREDICTED: synembryn-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007251060.3 True 3166 mRNA 0.51 15 15117166 15134369
XM_022677225.1 False 3147 mRNA 0.51 14 15117167 15134369

Neighbor

gene id symbol gene type direction distance location
polr3d polr3d coding upstream 95345 15014840 ~ 15021821 (+)
rcn3 rcn3,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding upstream 112314 14996132 ~ 15004852 (+)
LOC103043011 tspan4b,LOC108427360,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108280533 coding upstream 181020 14925107 ~ 14936146 (+)
LOC103042699 NA coding upstream 197430 14914028 ~ 14919736 (+)
LOC103042394 NA coding upstream 208383 14905488 ~ 14908783 (+)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671 coding downstream 138375 15272744 ~ 15278422 (+)
LOC103025681 NA coding downstream 606803 15741172 ~ 15747723 (+)
rnf113a rnf113a,LOC106606873,LOC107693494,LOC106601610 coding downstream 831596 15965965 ~ 15977033 (+)
LOC103033944 LOC103033944 coding downstream 903439 16037808 ~ 16040212 (+)
limd2 limd2,LOC107721965,LOC107674139,LOC107658411 coding downstream 911885 16046254 ~ 16080694 (+)
G10711 NA non-coding upstream 4518 15108977 ~ 15112648 (+)
G10699 NA non-coding upstream 28069 15087928 ~ 15089097 (+)
G10697 NA non-coding upstream 29973 15075340 ~ 15087193 (+)
G10698 LOC108427365,LOC108280300 non-coding upstream 61375 15052200 ~ 15055791 (+)
G10694 NA non-coding upstream 66279 15049389 ~ 15050887 (+)
G10706 NA non-coding downstream 2175 15136544 ~ 15163835 (+)
G10720 NA non-coding downstream 59429 15193798 ~ 15231915 (+)
G10822 NA non-coding downstream 151346 15285715 ~ 15286735 (+)
G10826 LOC108427385,LOC100528069,LOC108427383,LOC106526789,LOC108274011 non-coding downstream 537242 15671611 ~ 15713400 (+)
G10843 NA non-coding downstream 617139 15751508 ~ 15753268 (+)
G10510 smg1,LOC107729485,LOC107583093 other upstream 709725 14404403 ~ 14407441 (+)
LOC111193423 arl6ip1,LOC107658451 other upstream 718471 14314792 ~ 14398695 (+)
G10503 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 other upstream 745648 14361865 ~ 14371518 (+)
LOC103036470 NA other upstream 795306 14316407 ~ 14321860 (+)
G10450 LOC103035240,LOC108427335,LOC107732842,LOC107674167,LOC107563993,LOC107732871,LOC107658445,LOC107729508,LOC108280773 other upstream 953060 14117612 ~ 14164106 (+)
G10825 syt5a,LOC108427381,LOC107658481 other downstream 515913 15650282 ~ 15655338 (+)
G10838 NA other downstream 624393 15758762 ~ 15769243 (+)
G10879 NA other downstream 818477 15952846 ~ 15960378 (+)
ddx42 ddx42 other downstream 877325 16011694 ~ 16035284 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other downstream 1090352 16224721 ~ 16300667 (+)

Expression


Co-expression Network