ddx42 (ddx42)


Basic Information

Item Value
gene id ddx42
gene name ddx42
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16011694 ~ 16035284 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14722
tttttttttctttttttttgggtgatgcaatataattctgatatcaatATGAACAATTGAAGGAAAAGGCATCGCCTAATGGATGGAGCCAGGCTACAGAACCTattgtgctttcttttttttttttttgcttgttatatgttatattatcATATAATCAGTGGCATAATATGGTCATGATATGACGATCATTTATTTCTGGAACAAGGTAtcatccaaaaataaataaataaacacactgaacattAGTCAGTAACATGCTCTAATGatgatgcattattattattaaacaactTTCGGTCTCAGTACATAttgatattgtattattattgtccagccctaagTTGACTGCTGTCAacgtcttctttttctttcactaaATACAGAAATGCACCTTGTATCACCATGTCAGTAGATCTTGATGATTAATCTTCATGATGGACCGAtagaaataatctttttttctgtaaagttgccattttgggATTAAAAATTGTATTGTGACACAACGGCATTATGCTACAGTTGATTCAGAAACATTTTAGGATGTAAAAACACTGAAGTATTCCTTTCATCTTAACCTTCGATTGTGCAGTCCAATCTTGTTGGTTTCCATTCTAAGCAAGCAGGAACTCACCCGGTTCCACTGACTTCCACTaccaagcattttttttttttttttgcagataagGTTGGAAACCTTTGCTATAGATGACTCTGTTTGCCTGGCAGGCTGTTGATGCTGTTTTGTGAATGATTGTGTgaaagtgtttaataaataggaacagcaacaaaaaaaaggagTTGAGAGGAGGCTTATAATATGTATGTGTGAAGGATTCCATCTGTTTTAGGAGGAaactcagaattttttttaagagttcctTTTTTAGGGtacttttttttagatactGTATTATGGATGAAATTGCCATCAGTACCTGTTGCCTAAAGAATTAATTGAGTGTTTACATTCTCTTCATAATCCAGATTCTGAACAAATTTCTGCAGTTATCTAATTATTTAAGTACTTATGATAACGATTTATTAGATCAGAGTGTGATCTAGAAAATTTAGCTCAGTAATTGTGGTTTTCAGTGTATACTCCTAACTGGAGTATTCTCGGATTTCTCAGTCTAAGCATGATTAAAACAGACCCTGGTACCACAAGTAAGTGAGCAGCTTTAAAACAGTAACTGTGAAATAGTGACTAAATTGCATTTTATTGGATTTCTGACTAATTgtgatgttctgcagtaatcagattatgaagtgcTTGTAAACACGCTTACTgattgagaatttttttttttttttttttttaggtttaggattttcttctgtattttaaACCTGTCATTACAGGCTCTATGGCCTGTGTGCACTGTTGCATAGTCTGCTTTTCTCACATCTgtatttttggctttttttttaattaaagtgaaCTCCCATTCATCTCTTAAGGACAAAGGACTTCTGATTATCTAACCTGTCTACACCTAAAACATGCTGATATCCATAAAAATAGTGGGAAGGAAAAATGTTTCCATGCTTATGATGTTATTAGCTTTGTCTAAAAGCACTGAactttttcatttcattcattcattgtgTGATCTTGGTGCAAGTACTCACATCTTGACATCTCATTCTGGCTTTAATAAACTTGTTGAATCCTCT
>XM_022677092.1
GGACAGGGCCCAGAATCACTTTCGTGTGACGTGAGAGCACAACAGATCTGAGTGGACGGTGAGGGGCGGTAAAGCTGCTGCGCTCCGTTTACTCCTCAGGTCTTTACTCTGTGTCTACATATCAGCAGATACAGCCATGAATTGGAGCAAGGGAGGTCCAGGGGGCAAGCGAGGCTTTGGGTTTGGAGGGTTCTCCCTGTCAGGGGGTAAAAAAGAGGAACCTCGTGCGAATCAGAAGGCTCACAACTCGTTTGGAGCATCTGGGTCAGCAGGAGGTTACGGCAAAAACCAGCAGCTTCCAGCTTTCTACAAAATCGGGACTAAGCGGGCGAATTTCGATGAAGAAAATGCGTATTTTGAGGATGACGAGGACGAATCGAGCGCTGCGGATCTTCCCTATATCCCAGCAGAGAACTCTCCAACCAGACAGCAGTTTCAGTCTAGCGGAGGAGGAGGCGGCGGCGGTggatcagatagtgaagacgaTCCACTGGATGCCTTTATGGCTGAGGTGGAGAATCAAGCAGCCAAGGACATGAAGAAGCTGgaggaaaaggagaaagagaaaaagctgGTCAAGGGTATACGGGATGACATTGAAGAGGAAGATGAGCAAGAGGCTTATTTCCGTTACATGGCGGAGAACCCAACAGCTGGGCTGActcaggaggaagaggaggagaatgtGGACTATGATAGTGATGGAAACCCCATTGCTCCCACCACCAAAAAGATCATTCTCCCGCTGCCTCCTATTGACCACTCTGAGATTGACTACCCTCCCTTTGAAAAGAACTTCTATATTGAGCACGAGGAGCTCAACAGCCTGACTGGAACACAAGTGGTGGAACTGAGACAGAAACTCAACCTGAGGGTGTCTGGTGCTGCTCCTCCTAAACCCTGCACCAGTTTTGCCCATTTTAACTTTGATGAGCAACTTATGAACCAGATTCGTAAATCGGAGTACACAAAGCCTACGCCCATCCAGTGCCAGggTGTCCCTATTGCCCTGGGTGGCAGAGACATGATTGGCATTGCTAAAACTGGCAGTGGAAAGACAGCTGCCTTCATATGGCCGATGCTGGTGCACATAATGGATCAGAAGGAGCTGGAGCAGGGGGATGGGCCCATTGCTGTGATTGTCTGCCCCACCAGAGAGCTCTGCCAACAGATCCACACGGAGTGTAAGCGCTTTGGGAAGGTGTATGGCCTGCGCTCAGTGGCTGTGTATGGAGGTGGCAGTATGTGGGAACAGGCAAAGGCTCTACAGGAGGGGGCTGAGATTGTCGTGTGTACCCCGGGTCGTCTGATTGACCACGTGAAGAAGAAGGCCACATCACTGCAGAGAGTGACCTACCTGGTGTTTGATGAGGCTGACCGCATGTTTGACATGGGCTTCGAGTATCAGGTCCGATCCATCGCAAGCCACATaagaccagacagacagacTCTTCTGTTCAGTGCCACGTTCAGGAAGAAGATTGAAAAACTGGCACGGGATATTCTCATCGATCCGATCCGTGTAGTGCAGGGAGACATCGGAGAGGCCAATGAGGATGTGACCCAGCTGGTAGAGGTGTTGCCAAACGGTACAGATAAGTGGGTCTGGCTGACCCGCAGGCTGGTGGAGTTCACGTCGTCCGGCTCCGTGCTGATTTTCGTCACTAAAAAAGCCAACTGTGACGAGCTGGCAACCAACCTGCAGCAGGAGGGCTACAGTCTGGGCCTGCTGCATGGAGACATGGACCAGAGCGAGAGGAACAAGGTCATCAGTGACTTCAAGAAGAAAAGCCTGCCCGTTCTGGTGGCCACTGATGTTGCTGCTCGTGGTTTGGATATTCCCTCGATCCGTACGGTCGTGAACTATGATGTTGCCCGGGACattgacacacacactcatcggATTGGCCGAACAGGTCGTGCAGGGGAAAAGGGCGTGGCctacacactcctcacacaaaAAGACACCACATTTGCTGGTGACCTTGTTCGGAATTTGGAGGGAGCCAATCAAAGTGTATCCAAGGACCTACTGGATTTGGCCATGCAGaactcaTGGTTCAGGAAGTCTCGTTTTAAGGGAGGAAAAGGGAAGAAGCTGAATATCGGAGGTGGAGGTCTGGGCTACAGAGAGAGACCCGGTCTTGGCTCTGAATCCTCGGAGCGCAGCAGTAGTGCTGCTCTTGGTAACTATGAAGCCTACAAACCGTCCACTGGAGCTATGGGAGACCGCATGTCTGCCATGAAGCAAGCTTTTCAgGCTCAGTACAAGAACCACTTTGTGGCTGCATCTGGCAACCCTCCCAAGCTGAGCACACAGTCCAGCAGCACTACAGGCTGGACCAGCGCGGGCAGTCTGAGCTCCCTGCCGACAGGATCTCCTGAAGGAGCGGAAAAATCTCACATGTTGTCGACATTGTCCTCCGTGTCCTCAACACCCTCCTCTTCCCCCTCAGCTTCCTCTTTGTACTCCACCATGCCTCCTCCTGCAGCCTTCAGCCCGGCCACTAAAATGCCCGGCTTCAGCAGCGCTGGATCCCTGAGCTCTGTTTCAGaatcctactcctcctctccaggGTCTGCAGACGGGTCCCGCAGAGATGACAGGGGGCGCTATGGAGACAGTCACCATCGCCACGGTGACCGACACAGCTCTGGAGACCGAGACAGGGAAAGGGATCGGGAACGAGATCGGGACCGGGACAGAGACCGGGACCGTGAAAGGGAACGGGACCGCGATAGAGATCACTACGGAGAAAGAGACCGCCACAGAGACGGCGACAGGGATCGCCATGGAGACAGCCGCAATGGGGATGGCGGCGGTCGGCGGGACCGAGACGGACGCCCGGAGAGAGACGATTGGAGGGGAGAAAGGGGCGGAGACAGGGGAGGGTCACATAGGGGAGGGGAGGATAGCTTTGCGGTTCCGGATCTGCCGAAACGCAAGAAAAGCAGGTGGGACAattagagctgttttttttgtttgtttttgtatttgtttttctttcaaaacAGCATTGAAAGATATATGCTTGCCACTGTCCACATCCAACCTCATAGCaagcatctaaaaaaatttaaaaagatttaaaggAATACACTTGGTTTTACATCCTGATCTGTGAGTGTGCAATGATTTGGATTTCAATagattttttcaaaataaaataagcccTAAAAATCACACACTGAGAggggaaaaatgttttaatatatatatataattttttttctttttttttggggtgatgcaatataattctgatatcaatATGAACAATTGAAGGAAAAGGCATCGCCTAATGGATGGAGCCAGGCTACAGAACCTattgtgctttcttttttttttttttgcttgttatatgttatattatcATATAATCAGTGGCATAATATGGTCATGATATGACGATCATTTATTTCTGGAACAAGGTAtcatccaaaaataaataaataaacacactgaacattAGTCAGTAACATGCTCTAATGatgatgcattattattattaaacaactTTCGGTCTCAGTACATAttgatattgtattattattgtccagccctaagTTGACTGCTGTCAacgtcttctttttctttcactaaATACAGAAATGCACCTTGTATCACCATGTCAGTAGATCTTGATGATTAATCTTCATGATGGACCGAtagaaataatctttttttctgtaaagttgccattttgggATTAAAAATTGTATTGTGACACAACGGCATTATGCTACAGTTGATTCAGAAACATTTTAGGATGTAAAAACACTGAAGTATTCCTTTCATCTTAACCTTCGATTGTGCAGTCCAATCTTGTTGGTTTCCATTCTAAGCAAGCAGGAACTCACCCGGTTCCACTGACTTCCACTaccaagcattttttttttttttttgcagataagGTTGGAAACCTTTGCTATAGATGACTCTGTTTGCCTGGCAGGCTGTTGATGCTGTTTTGTGAATGATTGTGTgaaagtgtttaataaataggaacagcaacaaaaaaaa

Function

symbol description
ddx42 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleus. Orthologous to human DDX42 (DEAD-box helicase 42).

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX42

GO: NA

KEGG:

id description
K12835 DDX42, SF3B125; ATP-dependent RNA helicase DDX42

RNA

RNA id representative length rna type GC content exon number start site end site
TU14722 False 1680 lncRNA 0.34 2 16020360 16035284
XM_022677092.1 True 4024 mRNA 0.49 18 16011694 16034404

Neighbor

gene id symbol gene type direction distance location
rnf113a rnf113a,LOC106606873,LOC107693494,LOC106601610 coding upstream 34661 15965965 ~ 15977033 (+)
LOC103025681 NA coding upstream 263971 15741172 ~ 15747723 (+)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671 coding upstream 733272 15272744 ~ 15278422 (+)
LOC103046681 LOC108427369 coding upstream 877325 15117166 ~ 15134369 (+)
polr3d polr3d coding upstream 989873 15014840 ~ 15021821 (+)
LOC103033944 LOC103033944 coding downstream 2524 16037808 ~ 16040212 (+)
limd2 limd2,LOC107721965,LOC107674139,LOC107658411 coding downstream 10970 16046254 ~ 16080694 (+)
map3k3 map3k3,LOC107674169,LOC107570753,LOC107658467 coding downstream 54739 16090023 ~ 16135374 (+)
gfap gfap coding downstream 119946 16155230 ~ 16172380 (+)
LOC103035750 kcnh6a,kcnh6,LOC108427397,LOC107674162,LOC107570755,LOC107583039,LOC107658465 coding downstream 149724 16185008 ~ 16267197 (+)
G10882 NA non-coding upstream 29116 15979023 ~ 15982578 (+)
G10877 NA non-coding upstream 60518 15950934 ~ 15951176 (+)
G10865 NA non-coding upstream 90264 15863842 ~ 15921430 (+)
G10843 NA non-coding upstream 258426 15751508 ~ 15753268 (+)
G10826 LOC108427385,LOC100528069,LOC108427383,LOC106526789,LOC108274011 non-coding upstream 298294 15671611 ~ 15713400 (+)
G10903 NA non-coding downstream 146666 16181950 ~ 16215622 (+)
G10909 NA non-coding downstream 267419 16302703 ~ 16304584 (+)
G10910 NA non-coding downstream 271744 16307028 ~ 16311890 (+)
G10913 NA non-coding downstream 278535 16313819 ~ 16316489 (+)
G10914 NA non-coding downstream 281344 16316628 ~ 16318015 (+)
G10879 NA other upstream 51316 15952846 ~ 15960378 (+)
G10838 NA other upstream 242451 15758762 ~ 15769243 (+)
G10825 syt5a,LOC108427381,LOC107658481 other upstream 356356 15650282 ~ 15655338 (+)
G10510 smg1,LOC107729485,LOC107583093 other upstream 1604253 14404403 ~ 14407441 (+)
LOC111193423 arl6ip1,LOC107658451 other upstream 1612999 14314792 ~ 14398695 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other downstream 189437 16224721 ~ 16300667 (+)
LOC111194200 NA other downstream 1104141 17139425 ~ 17143348 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 3377523 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 4927765 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 4940920 20976204 ~ 20976277 (+)

Expression


Co-expression Network