ccdc47 (ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963)


Basic Information

Item Value
gene id ccdc47
gene name ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16224721 ~ 16300667 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14741
GAAATGTTGTGAATGCAGAATTAAATTTACTCTGCTAAGTAAAGGATGCAATGTTACGGTTACaatagtaataaatatttatcattttttaaccAGAGACTGTGATAAAACCAGTGAGAATGGGAAGACGGAAAAGACATGCAGGTAatgagggagggagaaagagagagagatatagagagagtaagagagaaggaaagaaagagagtgggcATGcgttaaagagagaaagagaggtaggaGAGATTCTATTGATGACAGCCCTCACCATGGACGCACATGGGAGACAGTTTGTCGTCCTGCCAGTGGAAAAATCAATCAACCCGACACACTACAGCTCATTCAAGGCTGTgtatttaaatcattaaatcataaatatagTATGTGCAaatatgagagtgtgtgtggcatATGTTCCTTTTACCCTTTGCTTCACCTGTTCTTTCCCATTCTCCTACCCTTGTCTTGGAGCTGTAGCCATGCTGCTTTTATCAGCTGATTCGGGGAGCGTTTTTAACAGGAAGCACATGCTGTGTTTTGTAATAATGCACGCTTCCCTGTCCCTTCTTTCGCAAGTCTTTCGATTCAAACTCTTTTATACACAAATGATGAGACAGTTTTTTATGATGTGAGTAAAGGCTCGGCATGTCTGCTTGTCCttgttaatca
>TU14742
ATAGACAGCACGCAAACAGTGTGCAGCAGCCATGGAAACGGGTGAACCGGCTAGATttttgctgaacagGAAGCTGCCCAGCGTCGTGAGCAGAAGAAAATGGATAAGAAGCAGATGAAGATGAAGCAGATTAAAGTGAAAGCCAtgtaaaaacatatacaaacacacacactgcttccaCAGCTCCTGGCATCTGAGAATGTATCCACTACTTCCATTGCTCCTGCCTGAACCCGAACCTGCCGTCGGACCCTCTCGGATTTTTATTTGCATGCATGAATCTTTTTGAATTGCTGCTTTGCCCCACTTAAACTCTCTGTCCAGTCAGCTTAATCAGTCACTGCCTTATTAATGGAGTAGTCTGCTCTGTTGGAGACCAGTGCTTTACTAACCAAATGTACTAATATATTGCCCAgtaatatagaatatagaaacatttattttgcaggacttttccaaaacagattatTAGTCTAAACAAATTTGTGAAAAATTAAAGAGGTGAAATAGGGAACCTGCATAAAACACAAGGGGAATACCTTTTTCAACCAGCAGCAAGAGGAACATCAGAGAAACATTTCTGGCACTAATCTCCTCTTTATTCTCTGTTTGAAGAAGATCAGAGACTTATATTGACCTTGTCTCCTCGAGGTCAATATCTGACCAAACTCTGTTAAATGGAGTACAATCAAATTTGTAATCCAATTTATTCAGTGCAGTTAACACAGCGTTAAGATTTCCCTTTTTATATTCCATTAAGCTGAACAAAACTCTTTGCCTGTGTCTTTAAAGTTATACTCCAGCATTTTTCAGTCTGATTTCTTTCTGCCCCATCTGTATTGTATGGTTAAATTCCACAATCAGTAATTTAATGCAATTTCTCTTTGctaagaaaagaagagaaaaataacTGTCTCAGAAAATCTGTTCTAATATTGACCAGTGAGTGTGTTCATATGGAGTTCAGTATCTGAGCATCTTGATTTCTTAGATTGGAGTAAGATCTAACTTAAAGTctgagtaaaaaattaagtttgaTCAAGAAGCCTTTAACAACAGAACACTTTTACAGCAACTGTGAAACTGAACGATTTGAAGAATCCtctttttttatacttaatGTATATTGATAGGGTGGTTTGATGTTAAAAGTGAGTACATTGGCTGGTTGCAAAATGTTCTCATTATTTGATAAGGCAAGTTGATGAAAACACGTTGAGTTGGATTACTGAACACAAAGTGTGTTTGCTATAgatgtaaattaaattatagaCTTAACTGAAACACTGGGTGTAAGTAGGGTGGGACAGGAATGAACGGTGATCTTTACAAAGTTATACTTATGAGGTTTTGTCTAATTATCTTTTAATACTATAAGAAACAGTTCAGATTACATTCACTTTGTTTAAGAATTGCTGTTATCTATAGTGATGAGGTATTTATGCATATATGTAGAGTAGACTGTATACAAACTCTTTTTATGAACTTTTTTGAGGCAGCAGCTTTAGTGGTGATTCCTTGGTGGCAGAAATACATCAGAATTGTCCTCCACAAGACTCTACTTCATAATACAGATGTGTCAGCGAGAGATTAAGTTCAGGAAATGctggagtatttatttatttgaaccaCTCAAAGATGTTCCTTTTACCCTTTGCTTCACCTGTTCTTTCCCATTCTCCTACCCTTGTCTTGGAGCTGTAGCCATGCTGCTTTTATCAGCTGATTCGGGGAGCGTTTTTAACAGGAAGCACATGCTGTGTTTTGTAATAATGCACGCTTCCCTGTCCCTTCTTTCGCAAGTCTTTCGATTCAAACTCTTTTATACACAAATGATGAGACAGTTTTTTATGATGTGAGTAAAGGCTCGGCATGTCTGCTTGTCCttgttaatca
>XM_022677856.1
CTTGGGACGCGGCCCTCGCTTGCAGAAGACAGTACGACAGGCAGGCGGCGAGCTGTGAGATACTGTCGACACAAGCAAGAAACGCCTGGCTTATAACGTCGTAATACAAGAAGAACTAGAAGATTGAGCCATGAGGAGCTGTCTGTTGCTGCTCccagccctgctgctgctgctggccctGCCAGACACCAGGGGGCGCTACAATGATGAGTTTGACGACGGGGAGGACCTAGCTGAGTTTGATGATAACGACTTTGCTGAGTTTGAGGATGTTAGCGAGGACCCAACAGTGGAGACTGAAAGCGAGCCTCCACCAAGGCCAGCGCCATCATCCTCGCCTGTagaagatgatgaagatgaagccACAGTGGAAACTGAGGATGGGCAAGACGAGTTTGAAGATGCAGATGCACAGGATCAGGACATGTTCAACAAGTATGACCAAGAGGAATTTGAGGGTTATGAGTCTAAGTCTAACCCGTCCTTCAAGGACACGCTCATCTATCGAGAGGTCCCAGCACATCTCCAGAATAGCTGGGAGAGCTACTACATGGAGATCCTGATGGTCACTGGCCTCCTTGCCTACATCATGAATTACATCATTGGcaagaacaaaaacagcagaCTTGCTCAGGCATGGTTTAACTCTCATAGAGAGCTGCTGGAGAGCAACTTTGCCCTTGTTGGTGATGATGGTACGAGTAAGGAAGCCACCAGCACGGGGAAGCTAAACCAAGAGAATGAACACATCTATAATCTGTGGTGCTCAGGACGTGTCTGCTGCGAGGGCATGCTCATTCAACTGAAGTTTCTGAAAAGACAGGACCTGCTGAATGTATTGGCCAGGATGATGAGGCCAACCTGTGATCAAGTGCAAATCAAAGTTACTCTGAATGATGAAGACATGGATACGTTCGTATTTGCTGTGGGCAGCCGGAAGGCAATGGGCCGGCTGCAGAAGGAGATGCAGGACCTGAGTGAGTTCTGCGGAGATAAGCCCAAGTCGGGGGCGAAGTACGGCCTCCCTGACTCTCTGGCCATCCTATCAGAGATGGGCGAGGTCACGGATGGAGTGATGGACAGTAAGaTGGTACATTACATCGTCAACCATGCCGACAAGATTGAGTCCATCCATTTCTCGGACCAATTTTCTGGTCCAAAAGTTATGCAAGAGGAGGGCCAGCCTTTAAAGCTCCCTGAGACCAAGAAAACGCTGCTGTTTACATTTAATGTGCCTGGGATGGGTAACACATCTCCCAAAGACATGGACAGTCTGCTGCCCCTGATGAACATGGTGATCTACAGCATTGACAAAGTCAAGAAGCTGCGCCTCAACAGAGAGGTGAGTGCACAAACGTACAGATACTCAAATAATTCCTCAcctttctcactgtttctctttcaGGAAGCTGCCCAGCGTCGTGAGCAGAAGAAAATGGATAAGAAGCAGATGAAGATGAAGCAGATTAAAGTGAAAGCCAtgtaaaaacatatacaaacacacacactgcttccaCAGCTCCTGGCATCTGAGAATGTATCCACTACTTCCATTGCTCCTGCCTGAACCCGAACCTGCCGTCGGACCCTCTCGGATTTTTATTTGCATGCATGAATCTTTTTGAATTGCTGCTTTGCCCCACTTAAACTCTCTGTCCAGTCAGCTTAATCAGTCACTGCCTTATTAATGGAGTAGTCTGCTCTGTTGGAGACCAGTGCTTTACTAACCAAATGTACTAATATATTGCCCAgtaatatagaatatagaaacatttattttgcaggacttttccaaaacagattatTAGTCTAAACAAATTTGTGAAAAATTAAAGAGGTGAAATAGGGAACCTGCATAAAACACAAGGGGAATACCTTTTTCAACCAGCAGCAAGAGGAACATCAGAGAAACATTTCTGGCACTAATCTCCTCTTTATTCTCTGTTTGAAGAAGATCAGAGACTTATATTGACCTTGTCTCCTCGAGGTCAATATCTGACCAAACTCTGTTAAATGGAGTACAATCAAATTTGTAATCCAATTTATTCAGTGCAGTTAACACAGCGTTAAGATTTCCCTTTTTATATTCCATTAAGCTGAACAAAACTCTTTGCCTGTGTCTTTAAAGTTATACTCCAGCATTTTTCAGTCTGATTTCTTTCTGCCCCATCTGTATTGTATGGTTAAATTCCACAATCAGTAATTTAATGCAATTTCTCTTTGctaagaaaagaagagaaaaataacTGTCTCAGAAAATCTGTTCTAATATTGACCAGTGAGTGTGTTCATATGGAGTTCAGTATCTGAGCATCTTGATTTCTTAGATTGGAGTAAGATCTAACTTAAAGTctgagtaaaaaattaagtttgaTCAAGAAGCCTTTAACAACAGAACACTTTTACAGCAACTGTGAAACTGAACGATTTGAAGAATCCtctttttttatacttaatGTATATTGATAGGGTGGTTTGATGTTAAAAGTGAGTACATTGGCTGGTTGCAAAATGTTCTCATTATTTGATAAGGCAAGTTGATGAAAACACGTTGAGTTGGATTACTGAACACAAAGTGTGTTTGCTATAgatgtaaattaaattatagaCTTAACTGAAACACTGGGTGTAAGTAGGGTGGGACAGGAATGAACGGTGATCTTTACAAAGTTATACTTATGAGGTTTTGTCTAATTATCTTTTAATACTATAAGAAACAGTTCAGATTACATTCACTTTGTTTAAGAATTGCTGTTATCTATAGTGATGAGGTATTTATGCATATATGTAGAGTAGACTGTATACAAACTCTTTTTATGAACTTTTTTGAGGCAGCAGCTTTAGTGGTGATTCCTTGGTGGCAGAAATACATCAGAATTGTCCTCCACAAGACTCTACTTCATAATACAGATGTGTCAGCGAGAGATTAAGTTCAGGAAATGctggagtatttatttatttgaac

Function

symbol description
ccdc47 Predicted to enable calcium ion binding activity. Predicted to be located in rough endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human CCDC47 (coiled-coil domain containing 47).

NR:

description
PREDICTED: coiled-coil domain-containing protein 47-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24962 CCDC47; PAT complex subunit CCDC47

RNA

RNA id representative length rna type GC content exon number start site end site
TU14741 False 669 lncRNA 0.40 2 16224721 16300667
TU14742 False 1896 lncRNA 0.54 2 16298384 16300667
XM_022677856.1 True 2965 mRNA 0.42 13 16287230 16300400

Neighbor

gene id symbol gene type direction distance location
gfap gfap coding upstream 52341 16155230 ~ 16172380 (+)
map3k3 map3k3,LOC107674169,LOC107570753,LOC107658467 coding upstream 89347 16090023 ~ 16135374 (+)
limd2 limd2,LOC107721965,LOC107674139,LOC107658411 coding upstream 144027 16046254 ~ 16080694 (+)
LOC103033944 LOC103033944 coding upstream 184509 16037808 ~ 16040212 (+)
rnf113a rnf113a,LOC106606873,LOC107693494,LOC106601610 coding upstream 247688 15965965 ~ 15977033 (+)
meioc NA coding downstream 109848 16410515 ~ 16424926 (+)
LOC111194175 NA coding downstream 641637 16942304 ~ 16946439 (+)
LOC111194187 NA coding downstream 647593 16948260 ~ 16951992 (+)
LOC103039111 tiam1b,LOC108411134,LOC107705640,LOC108278361,LOC107670130,LOC107669892 coding downstream 1873409 18174076 ~ 18215882 (+)
LOC103031729 NA coding downstream 1939751 18240418 ~ 18263534 (+)
G10903 NA non-coding upstream 9099 16181950 ~ 16215622 (+)
G10882 NA non-coding upstream 242143 15979023 ~ 15982578 (+)
G10877 NA non-coding upstream 273545 15950934 ~ 15951176 (+)
G10865 NA non-coding upstream 303291 15863842 ~ 15921430 (+)
G10843 NA non-coding upstream 471453 15751508 ~ 15753268 (+)
G10909 NA non-coding downstream 2036 16302703 ~ 16304584 (+)
G10910 NA non-coding downstream 6361 16307028 ~ 16311890 (+)
G10913 NA non-coding downstream 13152 16313819 ~ 16316489 (+)
G10914 NA non-coding downstream 15961 16316628 ~ 16318015 (+)
G10915 NA non-coding downstream 17489 16318156 ~ 16318422 (+)
LOC107197663 NA other upstream 173796 14801118 ~ 16050925 (+)
ddx42 ddx42 other upstream 189437 16011694 ~ 16035284 (+)
G10879 NA other upstream 264343 15952846 ~ 15960378 (+)
G10838 NA other upstream 455478 15758762 ~ 15769243 (+)
G10825 syt5a,LOC108427381,LOC107658481 other upstream 569383 15650282 ~ 15655338 (+)
LOC111194200 NA other downstream 838758 17139425 ~ 17143348 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other downstream 3112140 19412807 ~ 19444831 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 4662382 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 4675537 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 5159183 21459850 ~ 21463649 (+)

Expression


Co-expression Network