G12362 (bco2b,LOC108436497,LOC107586303,LOC107657247)


Basic Information

Item Value
gene id G12362
gene name bco2b,LOC108436497,LOC107586303,LOC107657247
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21459850 ~ 21463649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16611
GTGTGTCTTTCCCTACATGGAGTGGCAGGACAAATCTGCGTGGAAATATTCTGCAAATTGTGTTGTAAACCTCATCTAGGCTGTCCCCAGTCTTCCTCAGATTCTGAATCATGAAATTGTTGATTGCTTTGCCGTCATCAGAGCAGCACATGTCCATGATAATGAAGCCATCTTCCTCATAACAGTTGATCTGATGAAAGGTGGACAGTGGCTGGGTGTAGTATTTGATGGGACTTTGCTTTCCAGTGTGCTTGTTGATCACATGGAAGACTGTCTGCTGTTTGGAGTCCCAGTAAACCCCATCACTGATGCCTTTCCCACGTAGCTTCCCTGTCACCACCTTCAGCAGGTCAATTTTGATGGGCTGCTCAACGAACACCACATAGTTCTCTGACATGGCAAAGCTGTGGTAGTATGACGGCTTAGTCTTGTCCCCAGATGGAATAGTGCATATAACAGTAGCTCCCTCCAGGGTCTCATCTGCACTGACCTTCTCTGGAGgcactttaatgatattataataCGCACCTTTAGATGTGTAAGAGTTGCCCATATTATATGTAGTTCCATCAGGATCTGTGTGAGGATGAGCTGTCGCTCCATTGACGGCAATAAACTTACTCCAATCCACCTTTTCCTTTGTCTCCAGGGTCTCAGGATCAATTCTGTGCATGAAGTTGGTCTCTGTGCTGACATAGTAGTCTCCTTTATACTGGACAAAGCTCACACTTGCGTTGTCTGTTGGTTGTGGCTTTTCAAAGCGGGAGAGGAAGCGCTGGAAGAAGTTCTTGCATGGGTCTGGCATGGCAAGTGTGCCAAATTCAGACACCACGATACGGTCACTCTCAGCATTCATCTTGTAGCAGTCGCTGTTCAAGAAGCGGCTCATGTAGGTCACTGTTCCTCCTTCAATTCTGAACTGGTGCAGAAGAGCCATTCCATCAAACCAGTGGTTGAAT

Function

symbol description
bco2b Predicted to enable beta-carotene 15,15'-monooxygenase activity and carotenoid dioxygenase activity. Predicted to be involved in carotene catabolic process and retinal metabolic process. Predicted to be active in mitochondrion. Is expressed in xanthophore. Orthologous to human BCO2 (beta-carotene oxygenase 2).

NR:

description
PREDICTED: beta,beta-carotene 9',10'-oxygenase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16611 True 959 TUCP 0.44 7 21459850 21463649

Neighbor

gene id symbol gene type direction distance location
LOC103033418 ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523 coding upstream 405995 20994106 ~ 21053855 (+)
LOC103030893 arcn1,LOC108436511,LOC108278096 coding upstream 499614 20951343 ~ 20960236 (+)
pih1d2 NA coding upstream 551043 20902276 ~ 20908807 (+)
LOC111193555 NA coding upstream 573383 20884548 ~ 20886467 (+)
LOC111193556 NA coding upstream 580819 20876909 ~ 20879031 (+)
nkapd1 LOC103031305 coding downstream 80707 21544356 ~ 21549087 (+)
LOC103031614 ppp2r1b,LOC104918016 coding downstream 111301 21574950 ~ 21597352 (+)
LOC111194279 NA coding downstream 301309 21764958 ~ 21827382 (+)
ttc12 NA coding downstream 381116 21844765 ~ 21905395 (+)
LOC111194280 NA coding downstream 455569 21919218 ~ 21931304 (+)
G12328 NA non-coding upstream 132819 21326410 ~ 21327031 (+)
G12325 NA non-coding upstream 136125 21322038 ~ 21323725 (+)
G12307 NA non-coding upstream 146337 21312656 ~ 21313513 (+)
G12297 NA non-coding upstream 150532 21263927 ~ 21309318 (+)
G12242 NA non-coding upstream 288532 21171105 ~ 21171318 (+)
G12369 NA non-coding downstream 7358 21471007 ~ 21471993 (+)
G12370 NA non-coding downstream 8966 21472615 ~ 21475035 (+)
G12373 LOC108436499,LOC108436498 non-coding downstream 19464 21483113 ~ 21519233 (+)
G12379 NA non-coding downstream 36548 21500197 ~ 21531538 (+)
G12410 NA non-coding downstream 146523 21610172 ~ 21613000 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 469786 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 483573 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 2015019 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 4316502 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 5159183 16224721 ~ 16300667 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 837347 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 1010003 22473652 ~ 22517780 (+)
G13067 NA other downstream 2390349 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 3237193 24700842 ~ 24722676 (+)
G13237 NA other downstream 3392284 24855933 ~ 24857022 (+)

Expression


Co-expression Network