spa17 (spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271)


Basic Information

Item Value
gene id spa17
gene name spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22300996 ~ 22384972 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16872
GATTGAGAATAATAAGCATagctgaaggagagagaggagcttGTTGGAGGCGCTCACAGTGCCGAGAGGTTTACGACCTATTGCGATTAGCTTAACACACAAACACGTTTATCGCCATCTGCTATTGCGCGTCATGGATTGCCATATCGAGGAATGCGGCCACCCACAGGAGGAAGAGGACATTATGGACATCCCCCTGGATGACCCCGAGGCCAACAAGGCGGCCGCCAAGATCCAGGCGGGTTTCCGTGGCCACATGACCCGGAAGAAGATGAAGCCTGGCGAGAAGCCTGGCGAGGAGCAGGAGGATCAGAAGGAGTAGAGACAGAAGACACGTCCGTGCCAGAGCAGTGAGGACGTCCACGCGTCTCTCTGTGGACAGCAGGACGACTTCTGGCCCTCTTCCTAGAGATGTACCTTTTTATGTAGAGAAAAGAAGTAGTCATAGGCTGGATATCTCGTCTGATATATGAACGCTTGttctctccagctctctctctctctgtctatctctctcttattctttctcttttcagcTTCTTATCTTATCCAGTCTGGGGGAATAGTTTCCCCGAAACCAGCATGCATCTACGTCTCACGGGCATGCACTCGATGCATCTGTACTCTTCCTGATCGTGTCCTCGTCCAGATGTTGGTGTGAAAGTGACAAGGAATGCCCTTAGAGTTTTATCACATACTGCTCAAATTCAGATATCTACGTATCTAAATACTTTAGATTTGGAATTATGGGATTATGCATCAtggttgtcttttttttgtataaaaaaaaatatatatatatatttgcttgaGAGATTTCCTTTCCTGCTTTCCTTATATGGTGATCAGCATAAGTAATGTGTAGGATTTTtggtttgattttattttagtttcttattttgttgtttttgttgttgatgatttGTGCAATTTATTGAATGATATTGTAAGGATATATGGATTTATTGCTATTATGaatctgttttaatttatgtcgTTAAGATGTTATCATGTTATCTTGTTATTTGTTTGCTTTGCACCCTTTAACAacagttttttcttcttcttcttcttagtCTTAGTCTTAGTAGAATCagctgaaacaaacaaacaaacaaaaaaatagaaatcagAGCTTCCAAAACAGCAGTTAGCATGGctggattttctttctttctgattaatttctttatttctttctctttctttcaaacTCATCAAGTTACTGTATTTCTCAGAGTGTAAGAACAATGATTTGACTAGGAATGAAAGTTTTATCAGAGACTGTAAAGATTGTTTTGCATGTACGCGACTTAATGAAGCACTGTATCAGCAGCAAACCCAATAAAAAAGctctgaaatgtgttttt
>TU16873
GATTGAGAATAATAAGCATagctgaaggagagagaggagcttGTTGGAGGCGCTCACAGTGCCGAGAGGTTTACGACCTATTGCGATTAGCTTAACACACAAACACGTTTATCGCCATCTGCTATTGCGCGTCATGGATTGCCATATCGAGGAATGCGGCCACCCACAGGAGGAAGAGGACATTATGGACATCCCCCTGGATGACCCCGAGGCCAACAAGGCGGCCGCCAAGATCCAGGCGGGTTTCCGTGGCCACATGACCCGGAAGAAGATGAAGCCTGGCGAGAAGCCTGGCGAGGAGGTGAGCAGCAGCGGTGAGACCCTCAACGGCAGCCAGGGGGACACAGCAGGAGGATCAGAAGGAGTAGAGACAGAAGACACGTCCGTGCCAGAGCAGTGAGGACGTCCACGCGTCTCTCTGTGGACAGCAGGACGACTTCTGGCCCTCTTCCTAGAGATGTACCTTTTTATGTAGAGAAAAGAAGTAGTCATAGGCTGGATATCTCGTCTGATATATGAACGCTTGttctctccagctctctctctctctgtctatctctctcttattctttctcttttcagcTTCTTATCTTATCCAGTCTGGGGGAATAGTTTCCCCGAAACCAGCATGCATCTACGTCTCACGGGCATGCACTCGATGCATCTGTACTCTTCCTGATCGTGTCCTCGTCCAGATGTTGGTGTGAAAGTGACAAGGAATGCCCTTAGAGTTTTATCACATACTGCTCAAATTCAGATATCTACGTATCTAAATACTTTAGATTTGGAATTATGGGATTATGCATCAtggttgtcttttttttgtataaaaaaaaatatatatatatatttgcttgaGAGATTTCCTTTCCTGCTTTCCTTATATGGTGATCAGCATAAGTAATGTGTAGGATTTTtggtttgattttattttagtttcttattttgttgtttttgttgttgatgatttGTGCAATTTATTGAATGATATTGTAAGGATATATGGATTTATTGCTATTATGaatctgttttaatttatgtcgTTAAGATGTTATCATGTTATCTTGTTATTTGTTTGCTTTGCACCCTTTAACAacagttttttcttcttcttcttcttagtCTTAGTCTTAGTAGAATCagctgaaacaaacaaacaaacaaaaaaatagaaatcagAGCTTCCAAAACAGCAGTTAGCATGGctggattttctttctttctgattaatttctttatttctttctctttctttcaaacTCATCAAGTTACTGTATTTCTCAGAGTGTAAGAACAATGATTTGACTAGGAATGAAAGTTTTATCAGAGACTGTAAAGATTGTTTTGCATGTACGCGACTTAATGAAGCACTGTATCAGCAGCAAACCCAATAAAAAAGctctgaaatgtgttttt
>TU16874
GATTGAGAATAATAAGCATagctgaaggagagagaggagcttGTTGGAGGCGCTCACAGTGCCGAGAGGTTTACGACCTATTGCGATTAGCTTAACACACAAACACGTTTATCGCCATCTGCTATTGCGCGTCATGGATTGCCATATCGAGGAATGCGGCCACCCACAGGAGGAAGAGGACATTATGGACATCCCCCTGGATGACCCCGAGGCCAACAAGGCGGCCGCCAAGATCCAGGCGGGTTTCCGTGGCCACATGACCCGGAAGAAGATGAAGCCTGGCGAGAAGCCTGGCGAGGAGGTGAGCAGCAGCGGTGAGACCCTCAACGGCAGCCAGGGGGACACAGCAGGAGGATCAGAAGGAGTAGAGACAGAAGACACGTCCGTGCCAGAGCAGTGAGGACGTCCACGCGTCTCTCTGTGGACAGCAGGACGACTTCTGGCCCTCTTCCTAGAGATGTACCTTTTTATGTAGAGAAAAGAAGTAGTCATAGGCTGGATATCTCGTCTGATATATGAACGCTTGttctctccagctctctctctctctgtctatctctctcttattctttctcttttcagcTTCTTATCTTATCCAGTCTGGGGGAATAGTTTCCCCGAAACCAGCATGCATCTACGTCTCACGGGCATGCACTCGATGCATCTGTACTCTTCCTGATCGTGTCCTCGTCCAGATGTTGGTGTGAAAGTGACAAGGAATGCCCTTAGAGTTTTATCACATACTGCTCAAATTCAGATATCTACGTATCTAAATACTTTAGATTTGGAATTATGGGATTATGCATCAtggttgtcttttttttgtataaaatatatatatatatatatatttgttttttcttgataatcacacctctaggatacatgtagatactaaaaacctgacactcagagcagcctataccgttcagtattttgatcatgTCCAATATGGCCAATAATATTTCAACTAATATCAAAACTCATTTACTATACTAGCTATTTATTTTCATCTGCTTATATTAACAACAACTGTTATAATAAagagttattccacaaaatgatgagaaaaatatttttatttaggacaCACAATGAAACCatgtacaaaaatgtaca
>TU16875
aaaaaaaaaaaaaaaaaaaaaaaaatagaaatcagAGCTTCCAAAACAGCAGTTAGCATGGctggattttctttctttctgattaatttctttatttctttctctttctttcaaacTCATCAAGTTACTGTATTTCTCAGAGTGTAAGAACAATGATTTGACTAGGAATGAAAGTTTTATCAGAGACTGTAAAGATTGTTTTGCATGTACGCGACTTAATGAAGCACTGTATCAGCAGCAAACCCAATAAAAAAGctctgaaatgtgttttt
>XM_022677927.1
TTTAGACCGGTTTGTGCCTCTTCGCTTTCCGTAGTTCAGACTCGGTTGCCTAGCAACGCCTGACAACAATGAGTGCATAGCAACGGCCTGAGACGCTTAGAAACAAACATGTCCGTGCCTTTCTCCAACACCAACCTTCGAGTTCCTCATGGATTCGGCAATATTCTGGAGGGTCTTGCGAGAGAAGTGCTGAGAGAGCAGCCTGACGACATCCCCACCTTCGCCGCCGTCTACTTCACAGCACTTCTCAAGCAAAGAGACGAAAGTGGCCTAGATCCCGCTGAATGGGGAGCCCGATTAGAGGACAGGTTCTATAATAACCATGCTTTCAAGaataaagaaaacCAAGGAAACTCCAGCTCAACCAAAGTAACCCAGGCCTCGCTGAGCGATGAAGACAAGGTTGATCGGGCTGAATCGTTTGGAAATGAAGAGGAATTCACTCAGCCAACTCAGAACTCCTGGCCTTCATCTGAGAACACTGATAATGATGCTAAAGCTCAACAGGAAGTGCAGGAAAGTGAAGAAGCATCTGAGAATAAAGCAGATGATGAATCAGGGGAGAGTGATCCTGTTATCACTCCTGAGGTTTCCTTCAGAGGAACTGCAGATGTTGATATATGTGCTGAAGGACTTAAAGAAACTGAAGAAACGGGAGAGATCAGGGAGCTGGAGAAAGAAACTGGGGAagatggaaaagaaaaagaagaagaagaagaagaagagctcaAGGCCACACCTTTAACCTCATATAGTGGTTTTGTGGATGTAGATGTGTGTGCTGAGGAACTGCAGTCTTCTACTTTGCAGGCGGATGATGATGAGTCTGCGTATGAAGATACTGAAGGAAGGATGGGTTTGATTGATGCACATCCTGCTCTCGAAGCTTCAGAAAGCCCAAAACCTGTCCAAGGTGAGGAAGAGCTGTCTCGAGAGTCTGGAGATGTCCTGGATTCTCATGATAAATTCATCGAAACTCTGTCTGGTGCTGAATCCCCACTAAATGTTGAGCAGGAAGTGTCTGATAACGAAGAATTATCAGTTTTTCTCCCAGTAGAAGAAGCAGAAACTAAAGAAGAAACTGAGGATCCTTCTCAAAACACTCTCTCAGAAATGACTGATGATTTGTTAGAAGATGGCGATAAAGAAAACAGTCATCTTGAAGAATTCAAGAATTCAAACGAAGCTTTTGAGGACGATAACGATCAAGTCGATCAAGTTCTGAGCACTGATCATCTTCAGTTTGCTTCTGAGACGACTCAAGAAGAAGATGAGGAGAATTATCCTAGTCCTGAAGCTCCAGTAGACGAGTCAATGGATGAAGGGCTAATGGTCAGCAATACTAGTCTCATTGATGAAGATGACCCAATCCTATCTCAGCAGGATGTTCCAAAAATTGAAGACAGCAAAGAAGATCAAAGCATGAATGATACTGAGATGAAAGAAGACGACGTAACGACTCAAGATGCTGAAGAAGCTTCCAATAGTCCAACTCCTGAGGAAGCTGCTCGTGAGGAAGCTAAAGAAGACAGCACAGAGGTCATCTACGAAGAGCAGACTGAGGAAACGGAGACAGATTTAGACCAAGAAGAAGGACAGTCTGAACATCAGGACATCAGCAGGGACATCAGCAAGGACATTAGCCAGAACTCCACTCTTCAAACAGAGgacaaggaggaggaggaggatccaGAAAACAAGCGTGAGGGACAgTACTATAGACAGGCCAGTCCAGTACCTGTAGTCTCTTTTTCTGGAGCCATGAGTTTgagagagaggagcttGTTGGAGGCGCTCACAGTGCCGAGAGGTTTACGACCTATTGCGATTAGCTTAACACACAAACACGTTTATCGCCATCTGCTATTGCGCGTCATGGATTGCCATATCGAGGAATGCGGCCACCCACAGGAGGAAGAGGACATTATGGACATCCCCCTGGATGACCCCGAGGCCAACAAGGCGGCCGCCAAGATCCAGGCGGGTTTCCGTGGCCACATGACCCGGAAGAAGATGAAGCCTGGCGAGAAGCCTGGCGAGGAGGTGAGCAGCAGCGGTGAGACCCTCAACGGCAGCCAGGGGGACACAGCAGGAGGATCAGAAGGAGTAGAGACAGAAGACACGTCCGTGCCAGAGCAGTGAGGACGTCCACGCGTCTCTCTGTGGACAGCAGGACGACTTCTGGCCCTCTTCCTAGAGATGTACCTTTTTATGTAGAGAAAAGAAGTAGTCATAGGCTGGATATCTCGTCTGATATATGAACGCTTGttctctccagctctctctctctctgtctatctctctcttattctttctcttttcagcTTCTTATCTTATCCAGTCTGGGGGAATAGTTTCCCCGAAACCAGCATGCATCTACGTCTCACGGGCATGCACTCGATGCATCTGTACTCTTCCTGATCGTGTCCTCGTCCAGATGTTGGTGTGAAAGTGACAAGGAATGCCCTTAGAGTTTTATCACATACTGCTCAAATTCAGATATCTACGTATCTAAATACTTTAGATTTGGAATTATGGGATTATGCATCAtggttgtcttttttttgtataaaaaaaaatatatatatatatttgcttgaGAGATTTCCTTTCCTGCTTTCCTTATATGGTGATCAGCATAAGTAATGTGTAGGATTTTtggtttgattttattttagtttcttattttgttgtttttgttgttgatgatttGTGCAATTTATTGAATGATATTGTAAGGATATATGGATTTATTGCTATTATGaatctgttttaatttatgtcgTTAAGATGTTATCATGTTATCTTGTTATTTGTTTGCTTTGCACCCTTTAACAacagttttttcttcttcttcttcttagtCTTAGTCTTAGTAGAATCagctgaaacaaacaaacaaacaaaaaaatagaaatcagAGCTTCCAAAACAGCAGTTAGCATGGctggattttctttctttctgattaatttctttatttctttctctttctttcaaacTCATCAAGTTACTGTATTTCTCAGAGTGTAAGAACAATGATTTGACTAGGAATGAAAGTTTTATCAGAGACTGTAAAGATTGTTTTGCATGTACGCGACTTAATGAAGCACTGTATCAGCAGCAAACCCAATAAAAAAGctctgaaatgtg

Function

symbol description
spa17 Predicted to enable calmodulin binding activity. Acts upstream of or within cilium movement. Located in motile cilium. Orthologous to human SPA17 (sperm autoantigenic protein 17).

NR:

description
PREDICTED: sperm surface protein Sp17 isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16872 False 1370 lncRNA 0.38 3 22329719 22341513
TU16873 False 1416 TUCP 0.41 3 22329719 22341513
TU16874 False 1119 TUCP 0.43 4 22329719 22384972
TU16875 False 272 lncRNA 0.30 2 22300996 22341513
XM_022677927.1 True 3153 mRNA 0.44 9 22319293 22341508

Neighbor

gene id symbol gene type direction distance location
ankk1 NA coding upstream 345152 21938389 ~ 21955844 (+)
LOC111194280 NA coding upstream 369692 21919218 ~ 21931304 (+)
ttc12 NA coding upstream 395601 21844765 ~ 21905395 (+)
LOC111194279 NA coding upstream 473614 21764958 ~ 21827382 (+)
LOC103031614 ppp2r1b,LOC104918016 coding upstream 703644 21574950 ~ 21597352 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding downstream 21407 22406379 ~ 22435434 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding downstream 136270 22521242 ~ 22529283 (+)
LOC103038567 LOC108436528 coding downstream 148707 22533679 ~ 22614509 (+)
LOC103034742 grik4,LOC108439963,LOC108277597 coding downstream 763039 23148011 ~ 23500229 (+)
cbl cbl coding downstream 1171745 23556717 ~ 23638212 (+)
G12523 NA non-coding upstream 73846 22164761 ~ 22227150 (+)
G12514 NA non-coding upstream 167354 22130603 ~ 22133642 (+)
G12513 NA non-coding upstream 169996 22129179 ~ 22131000 (+)
G12496 NA non-coding upstream 218325 22030440 ~ 22082671 (+)
G12497 NA non-coding upstream 234642 22039853 ~ 22066354 (+)
G12562 NA non-coding downstream 91232 22476204 ~ 22519541 (+)
G12581 NA non-coding downstream 126558 22511530 ~ 22512347 (+)
G12585 NA non-coding downstream 187592 22572564 ~ 22615440 (+)
G12588 NA non-coding downstream 230610 22615582 ~ 22618917 (+)
G12592 NA non-coding downstream 252644 22637616 ~ 22637893 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 837347 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 1310932 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 1324719 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 2856165 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 5157648 17139425 ~ 17143348 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 88680 22473652 ~ 22517780 (+)
G13067 NA other downstream 1469026 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 2315870 24700842 ~ 24722676 (+)
G13237 NA other downstream 2470961 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 2667541 25052513 ~ 25056103 (+)

Expression


Co-expression Network