G12581


Basic Information

Item Value
gene id G12581
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22511530 ~ 22512347 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16927
gctgggtgcagcagcattagcattagcagctaaccactagcactaGCCACAATTAGCGGCTAATATTACCCAACAGCACTGCACTGAGCAACCCTAAGTTTTCCGGTAATCCAGGGCGATGTTAGCTAGCAGCTTGTCTCacgcagcttgttttaacatgcgtaaaaaggaagaaataattaattctgatttgacctttcacattcacattcatgtcacatgtcTATGGATGGGATACGTATCCCTTTTAGGACCACATAAGTGTCATATAAAAGATTTGGCActttcacacagccatgaaaaaatcagatctgagccatattgagcaaaaaatctgatttggcaggttcacacagccatgaaaaaaatcagatctgagccacattgagcaaaaaatctgatttggcaggttcacacagccataaaaaaaaatcagttctgagccacactgagcaaaaaatctgatttggcaggTTCACACAgcaatgaaaaaatcagatctcaaccacattgagcaaaaaatcagattggGCACCTCaacacagcaataaaaaaaaaatcagttctgAGCCACAtggagcaaaaaatctgatttggcacgttcatacagctatgaaaaaatcagatctgagccatattgagcaaaaaataggatttggcacgttcacataGCCATGAAAAGCCATGAAGAGTCACATTGcgcaaaaaaaacagatttgagacacttcagcctggtaatgtgaacgtagccttaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16927 True 756 lncRNA 0.40 2 22511530 22512347

Neighbor

gene id symbol gene type direction distance location
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding upstream 76096 22406379 ~ 22435434 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding upstream 120529 22352369 ~ 22391001 (+)
LOC111194234 NA coding upstream 193078 22309352 ~ 22318452 (+)
ankk1 NA coding upstream 555686 21938389 ~ 21955844 (+)
LOC111194280 NA coding upstream 580226 21919218 ~ 21931304 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding downstream 8895 22521242 ~ 22529283 (+)
LOC103038567 LOC108436528 coding downstream 21332 22533679 ~ 22614509 (+)
LOC103034742 grik4,LOC108439963,LOC108277597 coding downstream 635664 23148011 ~ 23500229 (+)
cbl cbl coding downstream 1044370 23556717 ~ 23638212 (+)
rnf26 rnf26 coding downstream 1232837 23745184 ~ 23750130 (+)
G12523 NA non-coding upstream 284380 22164761 ~ 22227150 (+)
G12514 NA non-coding upstream 377888 22130603 ~ 22133642 (+)
G12513 NA non-coding upstream 380530 22129179 ~ 22131000 (+)
G12502 NA non-coding upstream 445611 22063484 ~ 22065919 (+)
G12585 NA non-coding downstream 60217 22572564 ~ 22615440 (+)
G12588 NA non-coding downstream 103235 22615582 ~ 22618917 (+)
G12592 NA non-coding downstream 125269 22637616 ~ 22637893 (+)
G12593 NA non-coding downstream 132377 22644724 ~ 22645561 (+)
G12595 NA non-coding downstream 138483 22650830 ~ 22651377 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 126558 22300996 ~ 22384972 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 1047881 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 1521466 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 1535253 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 3066699 19412807 ~ 19444831 (+)
G13067 NA other downstream 1341651 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 2188495 24700842 ~ 24722676 (+)
G13237 NA other downstream 2343586 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 2540166 25052513 ~ 25056103 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 2734649 25246996 ~ 25339435 (+)

Expression


Co-expression Network