G12585


Basic Information

Item Value
gene id G12585
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22572564 ~ 22615440 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16939
tttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggtttacaatttggtaaaatcaaagaaactcatcatttttaagtggtctcttattttttccagagctgtagaactACACTGGACTCCTCTTTTCTCCTTCAGTTTTTTCTCTTCATCCACCACAAGAGGAAAGCTAGATCTCCAGCTGAGAAGATGAAGGGAGAGCATTGACCTCAAACACTTCCAATACGCAAAGAAGTTTAATGACTGCTGGACAAgcagaatatactgtattaccaTTGAGCTGGCTAATGATgcaaaatgtggaaataaagatGCAGTGACTCACTTCTTTCTCATGTAATCAACAGTTGTATTAataaatgtacaggggttgtacagtgaaactgaaacacctgtcatcattttattgtgggattttaggtttcatggctaaattggagcagcctggtgttcaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctctaaatattgcaatgcac

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16939 True 621 lncRNA 0.38 2 22572564 22615440

Neighbor

gene id symbol gene type direction distance location
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding upstream 43281 22521242 ~ 22529283 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding upstream 137130 22406379 ~ 22435434 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding upstream 181563 22352369 ~ 22391001 (+)
LOC111194234 NA coding upstream 254112 22309352 ~ 22318452 (+)
ankk1 NA coding upstream 616720 21938389 ~ 21955844 (+)
LOC103034742 grik4,LOC108439963,LOC108277597 coding downstream 532571 23148011 ~ 23500229 (+)
cbl cbl coding downstream 941277 23556717 ~ 23638212 (+)
rnf26 rnf26 coding downstream 1129744 23745184 ~ 23750130 (+)
LOC103047782 phykpl,LOC108439974,LOC108277665,LOC107743705,LOC107683819,LOC107585546 coding downstream 1281052 23896492 ~ 23909676 (+)
bcas3 bcas3,LOC107743646,LOC107664928 coding downstream 1333951 23949391 ~ 24473546 (+)
G12562 NA non-coding upstream 53023 22476204 ~ 22519541 (+)
G12581 NA non-coding upstream 60217 22511530 ~ 22512347 (+)
G12523 NA non-coding upstream 345414 22164761 ~ 22227150 (+)
G12514 NA non-coding upstream 438922 22130603 ~ 22133642 (+)
G12513 NA non-coding upstream 441564 22129179 ~ 22131000 (+)
G12588 NA non-coding downstream 142 22615582 ~ 22618917 (+)
G12592 NA non-coding downstream 22176 22637616 ~ 22637893 (+)
G12593 NA non-coding downstream 29284 22644724 ~ 22645561 (+)
G12595 NA non-coding downstream 35390 22650830 ~ 22651377 (+)
G12602 NA non-coding downstream 54479 22669919 ~ 22670219 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 54784 22473652 ~ 22517780 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 187592 22300996 ~ 22384972 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 1108915 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 1582500 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 1596287 20976204 ~ 20976277 (+)
G13067 NA other downstream 1238558 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 2085402 24700842 ~ 24722676 (+)
G13237 NA other downstream 2240493 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 2437073 25052513 ~ 25056103 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 2631556 25246996 ~ 25339435 (+)

Expression


Co-expression Network