rnf26 (rnf26)


Basic Information

Item Value
gene id rnf26
gene name rnf26
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23745184 ~ 23750130 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258871.3
CAGTTTGAGCGCAGTGTTGATGTTGTTGGTCAGCATAGTGAACAGACATGGCGCTGTGTGGAGAAGAGCGGACCGCGGGGCTGGATATAACCGAAGATGAGCGCGGATAGATCCGCCTGCcgtcctcctgcagctccccGCGCCCGGTGCTCTTTACTGCGGGTTCCCCTCTGCCGGTCTCCCGCCTTACAGACCAGCGGGGAGCGGCGGTCTGAGCCCCCGGGGCCGAGCCGTTCAAATATAAACATCCGCCGAGCAGGTCCGCCTGATCCCGCGCTCCTCACCCCGCAGGCGGGTCAGCGCCTCAACTACAGCCGCTGCAGCCTGTAGAGCAGCTCCGCCTGATAACCAGCGCCTGAACTACAGCCTGTAAAACAGCATTTACCGCTTAAACTGAGGAATTACTCACCTTACAGAGCAGCTGGAGCGAGGAGGAGAGCACTGACCATGTGAACTTTAAGATAAACTGCGAGAAATAGCTGGAAAAAAGGGGCAGAATTCAGTTTAATATAACTGTTAACGTTAACCAACTagttatttagcttagctaagctaaccagCTATCTAACTGAActgagctaagctaagctaactaccATAATATCTGCCCATGTTTGTTTTAGTCAGGGTGTAGGTTGTGGTTTCTTACTAATTACTAAACTTAAACCTAAATTgacaatacaatatatcataataaatCATCAATAAGAAGATATccagctaactaacattaactagtaagctaagctagctatctatctaactgACTGAGCAGGTTGTAGGCTAActgagctaagctaagctaacaaaCTACCTTATTATCTGACCATGTTAGCAGGCTATGGTTGCTTCCATAATTGTGATATAATCTAGGTTAACTATCTGGTTCCCTCCTAAAGTTATCTagctaaacctaaacctgtACTGACAATGAAAGCCATCTAGGTCAATAAGTCATCAATAAGGAGATCTCcagatagctaactagctacttaacctagctaagctaagctaattaacTAACTTGAAATCTGACCATCTGGTTGCTTCCatagttttgttttaaatctaGGATAACTAACTAATTCCTAAATATAAGCCTGAACTGACTGTAAAAGCCATCAATAAGTCATCAATAAGGGGATATATCCAGCTAACTATTTAaactaactagttagttaaGCTAGTGAACTAGCTATCTAAttgagctaagctaagctaacttactAACTACTTTATTATCTGGCCATGTTTGGTTTTGTATTATAATCTAGGTCAACTAACTGATTCCCACCTAAAGTTATCTaacctaaacataaacctacacctaaactgACAGTTAAAGCCATCAATATTAAAAAGTCACCATAATTGTGTTCTAATCTAGGTTAACTGACTAATTAACTGATTCTTAGCTAAAGCTATCTagctaaacataaacctaaatcTACCCCTAATCTGACAGTTAAAGCCATCAATATCAATAAGTCTTTAAAAAGGAGATCTCCAGCTAAGTAATATGGGTCTGCTGCACTTCATCTTCAGCTCGCTTGGACAGTGCATTGACCTCATCTTCCTCCTCTTGGACCTGAATTTTGTGCTCGTCAACTCCGTCATCCGGCTCCTGGTGGCTGTAGTCACCTTCATCAGCAGCCTACCCATGCTCCTCACGAACTCACTAGTAGAGTGCATGAACCTCACGCTCGTCTGCCTCATCACGATGGTGGACGGTGTGACCGTGTTGACCCACAACATGATCGGGAGCTGGATGCAGCTGCTCGGTGGGGCACTGGAAAGCTGCAAGATGGTGGGGTACCTGTCGTCGCATCTGCTGCTGCGCACCAAGGAGCTCCTGCACCGCGGCCTTCTGTCGGGGCACAGTTTACTGCGACAGGCCTGCGAGGGCTGCGGCATCGTGTTCAGCCTGTTGCTGTACTTCATCAACACCATCGTCAACCTCCTGCTTATAGGAACGCAGAACCTGTACGGGCTGATGGCTAGCATGGTGGAGGCCGTGTCCAGCCCTTTGCAGAAAGCTCTCGAGCTGACGCTGACTGTGCTGACGTTCTTTTATAGCACAATAGTTGGGGCTTCGATCCTTTTGTGGACACCATGCAGACTGGCCTTGCAGTTCCTAGGCTCGCTTGGACACATCTTCGTCAGCGTCTTCTTGCTCAACTTCTACGGACtcctgctaatgctgctcatcATTGCGGTTACGACCGTTTACATGAGTCCTGAGCTTTTTCAGCGAGTGGTCCAGAGGGTAATCCACTATGTCAACACGGTTCCCACCCTTCAGAGACTTCAGAGGACCCTTCAACGCTTCTATCTTCTAGAGAGGAATCTCTGGCAGAGGTTGGCATGGCCCCGTAGTCGTCTCGGACGCTGGACTTTAGCTGAAAGGAGGCAAGACGATGAAGAAGATGTGGGGCAAGGAGATGAGAACGTTCTGCAAGACGATGCCAACCCTGAAGCTCCTCAAAATGCCATCATAATAGATGGTCAGGATGAAGCAGACGATGCTGATGATCCTTTACACCAAGGCCAGGTCTTACCCCAAGGGCCCGACCCTCCGCTTCCCAGCTCCAGCACTCACAGACCCCTGCAGAAGATGCCTTCAGAGGAAGGTCCTAAAGGAAGCTCGGCTGATAATCTCTTAACTCTACTCcaggagcaggaggagaggaagaagtgCGTGATCTGCCAGGACAGCACAAAGACCGTGGTGCTGCTGCCGTGCCGGCACCTGTGCTTGTGTCGGGACTGCACCAACATCTTGCTGCGCCAACCCATCTACCAGCACAACTGCCCGCTGTGCCGCCATATGATCCTGCAGACCATGGATGTGTATCTCTAAAAGACTCTACGatgaaacagaaaagaaaagaacttcTGCAGAGACTTGTTGATTGTTTGTTTAATcgatggattgattgattgattaattctGCGAATCTCAGGTTTACAAACAAAGACGTTGCTAATCACGATGATCCGTGCCACCTTTCAGCCAATTACTTAATTACACTGCAAAGGTCGCGGATCTCCTGTAAATCTTTCGTCCATTCCACTGTGCTGAATCTTTTTGCTACTGTCACGTGTAAATACACATAGCCATAATGCCCTTTTTTACACTTGAGAGCTGTTTAAAGCTTAAGTTGAGGCTTGCTACTATGACAGTATCTTTCGTactttgtttgttctttttgtaTAATAGTTTAGCTTTTGTATGGACGTACTACACTAAATCTTTTATACCGCTGTGGTGATGTGAATGTAAGCTTTACATggagtaaaatagtaaaataactgCAGAGACGGGTACGCCACCTTTCAGAAAAGTTCAGAATCAACGTTCGTAGCTCTCTGggcataaattaataaaagttatgCTTTTACCTCATggattaaaatgttatattaaaataaaaagcattgcTTTTTCACTTTAGACATAAAGTCacatacaatacacaatatttaaaggcaaagatataatgattaaaatgattaactGTACAATTGAGGGAAGgggtgtgaaaatgtgaaagtaCACGGAGCTTTAAGGAGTCTTGAAATCCTAAAAgtaaaaattttgaaccaaattTGATCGCAGAGCATCATGGCTTTTTTTAGTTAATGCATACTCTAATATTacagctactactactactgcttttactacgAATGAGACTAGAAGGCTgtgaaacattattttttatttagatggAGTAAAAATAACTGCATAGATAGATACGCCACCTTTCAAAAGTTCAGAATCGACTTTTACACTTTAcgaattaaaatattacaaaaagcaTAGCTTTGTCACTTTACGTTGACAATGTAGtattgtgtgttggtgtggtgcagtggataacaccactgcctgccagtaagctaccatgtgggagactggggtttaattccaggtctgggtgactgaatgctgcacTACACCAATAACACCAAGTCCAtgggctagactcctaacactgGATTAGCCCTTTCTCTGTAATcggaataacttttttttttttaagtcactctggataagaatGTCAGataaatgccataaatataaaatgcaaatatatgtcTGAAGTGataaaactatgtttttttttccaatattttagtcCATGCTAAAATGATAGAATGGTTAACTGTATAGCTGAAATTTAGGACAAAATTTTAAATGCAGAGCTTTATGGCTTTTCAGTTAATACATActctactactaatactacttttactactaatgTGACTAGGCCTTTTAGGACATTTACCCGTGATGTTCTTCACTTTTCTCAGACATTTCAGAATCATCTACTTCCCTTATTATAGTTCTAAGCACATCTAACACTTCTTAAGTCTTAGGTTCGTTTACAGATTTTCAGTTTCAATCCAGAAACGCCCTGGTTCCCTCTAAATAAGCACAGAACTAACATAATGTCATGCAAACAATTTAAacatatagaatatataatatatgcaaCCAAATGGTGTTTGCACTGATCAGCCTTAACATTAAACCATCTTTCTAACATTGTGAAGGAAAGACTATACTGACACCAGCTCTGAACCATCAAGGCCTGGTCTTTACAAGCCATAGCAAATCATAATTAACCTTTTTAATagcttgtattattattattattattattattatagtagcTCTTCTttgtgattgtaaaaaaaaatgctagatTTTGCTCTCTCCATTTGTGCATCACTTGTTTCAGTTATAGATATCAATAATTAAGTTTTATTAGTAGATGATTATACTCCTAGTAAAAACatgatatataaattaaattctgACTAGTACAAATACCTGGGTACCTAGAAATTGGGTTAGGATCTGTGCCTCTGTCATTTTACGCTAAAAGATTTTCCATAATAATCTGAATATAttcatatacaactctggaaaaaaaaaaa

Function

symbol description
rnf26 Predicted to enable metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF26 (ring finger protein 26).

NR:

description
PREDICTED: RING finger protein 26

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15693 RNF26; E3 ubiquitin-protein ligase RNF26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258871.3 True 4947 mRNA 0.42 1 23745184 23750130

Neighbor

gene id symbol gene type direction distance location
cbl cbl coding upstream 106972 23556717 ~ 23638212 (+)
LOC103034742 grik4,LOC108439963,LOC108277597 coding upstream 244955 23148011 ~ 23500229 (+)
LOC103038567 LOC108436528 coding upstream 1130675 22533679 ~ 22614509 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding upstream 1215901 22521242 ~ 22529283 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding upstream 1309750 22406379 ~ 22435434 (+)
LOC103047782 phykpl,LOC108439974,LOC108277665,LOC107743705,LOC107683819,LOC107585546 coding downstream 146362 23896492 ~ 23909676 (+)
bcas3 bcas3,LOC107743646,LOC107664928 coding downstream 199261 23949391 ~ 24473546 (+)
tbx2 tbx2,tbx2b,LOC107685069,LOC107757046 coding downstream 736692 24486822 ~ 24495457 (+)
tbx4 tbx4 coding downstream 769032 24519162 ~ 24558604 (+)
kiaa0753 NA coding downstream 988761 24738891 ~ 24776461 (+)
G13043 NA non-coding upstream 20750 23710556 ~ 23724434 (+)
G13028 NA non-coding upstream 34646 23610250 ~ 23710538 (+)
G13012 NA non-coding upstream 93946 23543555 ~ 23651238 (+)
G13029 NA non-coding upstream 98349 23622224 ~ 23646835 (+)
G13025 NA non-coding upstream 124987 23572041 ~ 23620197 (+)
G13051 NA non-coding downstream 16355 23766485 ~ 23769612 (+)
G13065 NA non-coding downstream 90158 23840288 ~ 23843275 (+)
G13068 NA non-coding downstream 106861 23856991 ~ 23857360 (+)
G13069 NA non-coding downstream 107472 23857602 ~ 23857916 (+)
G13103 NA non-coding downstream 221117 23971247 ~ 23971794 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 1227404 22473652 ~ 22517780 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 1360212 22300996 ~ 22384972 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 2281535 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 2755120 20963049 ~ 20990064 (+)
G13067 NA other downstream 103868 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 950712 24700842 ~ 24722676 (+)
G13237 NA other downstream 1105803 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 1302383 25052513 ~ 25056103 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 1496866 25246996 ~ 25339435 (+)

Expression


Co-expression Network