tbx4 (tbx4)


Basic Information

Item Value
gene id tbx4
gene name tbx4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24519162 ~ 24558604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675350.1
GAGATGCTGAGCTGCGGGCTGAGCGCCGCGTAACGCTGGGATAACCCGCCCGCCGCACCGCACCGCGCGCGCCGCAAAGCGCCGAGGACCCGGATATGGAGGGACTGAGCCCATAGTCGGTCCATCAGCCGAGaGATGCTCCAGGAGAAGGCCTCAGCTGTGGCTGATGACGGCGTGACTGTGGCCCAGTCTGGTGGGCTTCCAGAACTTGCTGCTGATTCCTCACACCTGGGTTTACCTGAGACTCCCAGCATCCCCCACAATAATGAAGTCGACCAGAACATTGAGAACATTAAAGTTCTTCTTCATGAGCGTGAACTGTGGAAGAAGTTCCACGAGGCGGGAACTGAGATGATCATCACTAAAGCAGGCAGGCGGATGTTTCCCAGCTATAAGGTGAAAGTCACAGGGATGAACCCAAAAACCAAATATATCCTATTAATAGACATTGTTCCAGCTGATGATCATCGGTACAAGTTCTGCGACAATAAGTGGATGGTGGCTGGTAAAGCAGAGCCTGCCATGCCCGGGCGTCTCTACGTTCACCCCGACTCTCCGGCTACAGGAGCTCACTGGATGAGACAATTAGTCTCCTTTCAGAAGCTGAAGCTCACCAACAACCACCTGGACCCTTTTGGACACATCATCCTGAACTCTATGCACAAATATCAGCCCCGGCTGCACATCGTAAAAGCAGACGAGAACAACGCCTTCGGCTCTAAGAACACAGCTTACTGCACTCACGTGTTCCACGAAACCACGTTTATCTCTGTGACGTCCTACCAGAACCATAAGATAACACAGTTAAAGATTGAGAACAATCCGTTTGCCAAAGGTTTTCGTGGAAGTGATGAGGGAGACCTGCGTGTATCCAGGCTGCAAGGGAAAGATTACCCAGTGATCTCTAAGAACATGGTCCGGCAGCGGCTCATCTCCTCACACCCTCACCTGTCCGGGAAGTTGAGTTCAGGTGTTCTGACTGGTCACCCACAGGTCCACTCCCACTACCAGTACGAGACTGGAGTCCCGCTGCCCAGTTCAGACCCACAGGAGCCCCTGACCAGCCCGTTCACTTCCAGCAGAGAATCCAGTCTGATTTACCACTGCTTCAAACACAGAGATAACTCCCGGCACTTGGAGCTGGGCTGTAAGCGGCCGTATCTTGATGGAGCTCCGTCGGCCGTTCCTGAGGAGCACTACTTCCGCTCGCCTCCGTCATACGAGCCTCCGTTACTGAGCCACTCCTACTGCGGCGGCGGCGAGGCGCTGAGCTCCAGAGACGCCTGCATGTACGGGGGTATGGAGGTGGAGGCGGGTGCCGGGGGGGCGGTGGGTTCTGAGGAACTTCCTCCACCCTCGCTGAACTGCAACATGTGGGCGTCGGTGCAGCCGTACCCTCGCTACGGCGTGCAGACTGTGGAGGCTGTGCCCTACCAGCCCTTTACCGCCCACTTCTCCAGCACCGCCACCGCCGCCACCGCCGTGGTGCCGCACCACTCGCCGACCGTGCAGCATCCTCAACCGGCTCCTCCCCTTCCTGAGCTCATGTCCTTCACCGCACAGCGAGCTCTACCACCACCGgctccttcctcctcctcatcatcatcatcctcacccTCCGGCCCCGGGTCCCGCGACAGAACCGCCCACCCGCCTCTGTACCACAGGAAACCCGCCGGCTCTCCTCTGAGACCCCACAGAGATTACTCAGCCTACCCCTGCCAAAGCCCCACCCCCAGAGACCCCGTCTACCAGTACCACCAGATGGGTCTCAGCAGCATAGGAGCCCCCCCGCACTGGACTGatagctaaagctaagctaaagctagGGGGAGATTAGATTAGAGGTGTGTGAAACGGTCAGGTGTCAGGTGATGAGGTTTACctgttacactgtaaacccgGATACGCTGAATTTacttcaaaaaaaagaaagaaggagttt

Function

symbol description
tbx4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic hindlimb morphogenesis and embryonic pelvic fin morphogenesis. Predicted to be located in nucleus. Is expressed in diencephalon; mesoderm pelvic fin bud; pelvic fin bud; presumptive neural retina; and retina. Human ortholog(s) of this gene implicated in ischiocoxopodopatellar syndrome. Orthologous to human TBX4 (T-box transcription factor 4).

NR:

description
PREDICTED: T-box transcription factor TBX4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10178 TBX4; T-box protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675350.1 True 1945 mRNA 0.57 9 24519162 24558604

Neighbor

gene id symbol gene type direction distance location
tbx2 tbx2,tbx2b,LOC107685069,LOC107757046 coding upstream 23705 24486822 ~ 24495457 (+)
bcas3 bcas3,LOC107743646,LOC107664928 coding upstream 45616 23949391 ~ 24473546 (+)
LOC103047782 phykpl,LOC108439974,LOC108277665,LOC107743705,LOC107683819,LOC107585546 coding upstream 609486 23896492 ~ 23909676 (+)
rnf26 rnf26 coding upstream 769032 23745184 ~ 23750130 (+)
cbl cbl coding upstream 880950 23556717 ~ 23638212 (+)
kiaa0753 NA coding downstream 180287 24738891 ~ 24776461 (+)
LOC103028424 LOC108425893 coding downstream 230672 24789276 ~ 24873126 (+)
LOC103027752 NA coding downstream 421591 24980195 ~ 24982031 (+)
lipt2 lipt2,LOC107677087 coding downstream 513698 25072302 ~ 25086749 (+)
LOC111194299 NA coding downstream 589673 25148277 ~ 25161641 (+)
G13167 NA non-coding upstream 120510 24393299 ~ 24398652 (+)
G13159 NA non-coding upstream 164192 24345710 ~ 24354970 (+)
G13142 NA non-coding upstream 259745 24257714 ~ 24259417 (+)
G13139 NA non-coding upstream 266791 24249739 ~ 24252371 (+)
G13138 NA non-coding upstream 272779 24235491 ~ 24246383 (+)
G13197 NA non-coding downstream 88679 24647283 ~ 24687751 (+)
G13212 NA non-coding downstream 154722 24713326 ~ 24713963 (+)
G13214 NA non-coding downstream 165234 24723838 ~ 24726166 (+)
G13455 NA non-coding downstream 474297 25032901 ~ 25033376 (+)
G13458 NA non-coding downstream 488734 25047338 ~ 25049073 (+)
G13067 NA other upstream 663809 23853998 ~ 23855353 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 2001382 22473652 ~ 22517780 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 2134190 22300996 ~ 22384972 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 3055513 21459850 ~ 21463649 (+)
trnan-guu NA other upstream 3542885 20976204 ~ 20976277 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 142238 24700842 ~ 24722676 (+)
G13237 NA other downstream 297329 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 493909 25052513 ~ 25056103 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 688392 25246996 ~ 25339435 (+)
LOC103045399 LOC108426937,LOC108277812 other downstream 1003029 25561633 ~ 25642743 (+)

Expression


Co-expression Network