LOC103028424 (LOC108425893)


Basic Information

Item Value
gene id LOC103028424
gene name LOC108425893
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24789276 ~ 24873126 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675363.1
TGCGCGTGGAGGGGGCTGGATCTCCACGAGGGCCAATTTGCATTTTTCTGCGCATCACAATAATATCAAACGCAGCGGAGCTCGCGCCGCCGGTTACTGTGAATCCGCTGGAGGCGCTGAAGACATGCCGCTCCGAgtctgctaacacacacacacacacacacacacacacacaccgaagCTCGCAGAGCGCGCGCGTCAGTTCACCCACAGTGTTCCAGGCTGCGCGCGGGCCGCTGCGTGCGTGTAGAGCATGCGGGAGCGTGAAGCACAGCGCGCGCGTTTAAGGAGGTCGTTTGCGTGTCCTGCACCGCACTgacccgcagcagcagcagcgcgagGAGGGCGGGGAGAGCGCGGGAGGAGCGCGTGCTGTCCAAACTAAACTACCCCAAAAACCCGCAGCCGCGGCGGCGGATCTACCGGATACAGAGCGGGAGCAGCGGGATGGACAACGCGGCGCGAGGGAAAGtGACGCTGTGTAAACGCAGCGCGTCTCACTGGCGGATGCAGAACATTGAGCAGGAGTCGGTGGAGAGCTCTGATGAGGAGTTCTTCGACGCTCGAGAGGTGCTGGAGGGTAAGACAGCTATGCTGTTGGGGATGAGTCAGTGGAACTCCAATGATCTGGTGGAACAGATTGAAACGTTGGGTCAGATTGATCAGACTCAAGAGAGCTTGTACCGGATTGGTCGGAGCAGATGTGTCCCTCAGTCCAGTCTGGATTGTGCAGAAGATCCTGAGgtgAAGTGTCAGACTCAGGTTCTGGTGCTGGTGGTGCACGGGGGGAATATTCTGGACCCTGCAGGAGGAGACCCCGGGGCGAAGGCGGTGGACGTGAACACTCTGTCCTCAGTAATGGAGAAAGTGTCTCAGGCTCATTTCCAGGCTGCTTCCCAGCATGTGCTGATTAAACTGGTGCCCTGTCCGGCCGTGTGCGCTGAAGCTTTCTCACTCGTCTCCAAtctgaaCCCCTATAGTTATGATGAGAGCTGTGTCAGCAGCAGTGTGGATCATCTTCCTCTGGCAGCTCTTCCTCTTCTTGCCATTGTTGCACCACATTATCAAGACGCCGTATCGACGGTCATCACCAGAGCCAATAAGATTTACCAAGACTTCCTGCAGTCACCTGAAGGACAAGGCTTTACGGGACAGgtGTGTCTGTTGGGTGACTGTGTCGGGGGAGTGCTGTGTTTTGATGCTCTGTGTTTCAGTAACAGTCCGCAGCACAGCAGCCCGAGTCACAGAAGCCGATGCAGCAGCACAGAGAGCTTAAAGGAAAACCGGGGGCTTCTGGGAGAGACCGGCTCCGGCCTGAGCTCCAGCAAACGCCTCAGCAAGAGCAACATCGATATCTCAGCCCCCAGTGAAACCCGGACGAGACGGGGTCCGCTCAGCCGCAAACAGAGCGACTCATGTGATGCTGATTCATCCAACAGCCAGCATCACCCATTCATCAGCAGtctggTACAGGATGAGACTCCGGTGTTGAGTTTGGGTCGGTTTGATTTTGAAGTGTCTGAATGTTTTCTGCTCGGTTCTCCTCTCGGACTCGTATTAGCCATGAGACGCACTGTACTCCCCTCAGTACAcg

Function

NR:

description
PREDICTED: membrane-associated phosphatidylinositol transfer protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675363.1 True 1594 mRNA 0.57 9 24789276 24873126

Neighbor

gene id symbol gene type direction distance location
kiaa0753 NA coding upstream 12815 24738891 ~ 24776461 (+)
tbx4 tbx4 coding upstream 230672 24519162 ~ 24558604 (+)
tbx2 tbx2,tbx2b,LOC107685069,LOC107757046 coding upstream 293819 24486822 ~ 24495457 (+)
bcas3 bcas3,LOC107743646,LOC107664928 coding upstream 315730 23949391 ~ 24473546 (+)
LOC103047782 phykpl,LOC108439974,LOC108277665,LOC107743705,LOC107683819,LOC107585546 coding upstream 879600 23896492 ~ 23909676 (+)
LOC103027752 NA coding downstream 107069 24980195 ~ 24982031 (+)
lipt2 lipt2,LOC107677087 coding downstream 199176 25072302 ~ 25086749 (+)
LOC111194299 NA coding downstream 275151 25148277 ~ 25161641 (+)
eif4h eif4h,LOC107704308 coding downstream 495568 25368694 ~ 25378622 (+)
rffl rffl coding downstream 509035 25382161 ~ 25400864 (+)
G13214 NA non-coding upstream 63110 24723838 ~ 24726166 (+)
G13212 NA non-coding upstream 75313 24713326 ~ 24713963 (+)
G13197 NA non-coding upstream 101525 24647283 ~ 24687751 (+)
G13167 NA non-coding upstream 390624 24393299 ~ 24398652 (+)
G13159 NA non-coding upstream 434306 24345710 ~ 24354970 (+)
G13455 NA non-coding downstream 159775 25032901 ~ 25033376 (+)
G13458 NA non-coding downstream 174212 25047338 ~ 25049073 (+)
G13462 NA non-coding downstream 184867 25057993 ~ 25058489 (+)
G13491 NA non-coding downstream 246363 25119489 ~ 25120520 (+)
G13504 NA non-coding downstream 310179 25183305 ~ 25183545 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other upstream 66600 24700842 ~ 24722676 (+)
G13067 NA other upstream 933923 23853998 ~ 23855353 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 2271496 22473652 ~ 22517780 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 2404304 22300996 ~ 22384972 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 3325627 21459850 ~ 21463649 (+)
G13445 spcs2,LOC107677086 other downstream 179387 25052513 ~ 25056103 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 373870 25246996 ~ 25339435 (+)
LOC103045399 LOC108426937,LOC108277812 other downstream 688507 25561633 ~ 25642743 (+)
mfrp mfrp other downstream 787772 25660898 ~ 25673236 (+)
LOC103023549 gpr171 other downstream 915458 25788584 ~ 25795084 (+)

Expression


Co-expression Network