mfrp (mfrp)


Basic Information

Item Value
gene id mfrp
gene name mfrp
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25660898 ~ 25673236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU18257
CGGCCTGCAGCATTACATAGATTTTTAAGGAATTGGGTCACTCTACTGGTGCTAACCGGGGTTTCCAGGAACCTGCAGTCCTGATCAGTTTGCCTGTGCCACAGGAGAGTGTCTCCATCAGGATTGGCTATGTGATGGGTGGAATGACTGTGCAGATGGTGCAGATGAGCAAAACTGCAATAACTCCACCTACCCTCCATTCACTTCATCCTGTGAGCCCATTGAGGTGGAGATGTGCCAGGGTCTGAGCTATAACCTCACCTCTTTCCCCAACATTTGGCTCACCATTGCTGATCAGAGAGAGGCTGCCGAAATGCTGCACCAGTATAAAGTGCTGATGGAGCTGGCGTGTTTTGAACCCCTGAGGAAGCTGGTGTGTACCATGTTCTTACCACAGTGCAGCCTGCGAGGGGGCGTACTGCAGCCGTGCAGACCCGTTTGctcagcagcagagcagcagtgTAGCCGAGTGCTGGAACTCTTCAGTCTGACCTGGCCTTTTAACTGCCACCTGCTGCCGGACTCCCTCGACCCCATGGAGTGCTCCCTCCCttaacatatatacagctcaaaGTGTTTCACTGTGAACCATGACTTACAACACTTTAAGGTCGGTCTTTGCTGGTTGGAGTACCTTGCGGACTGGACTACTATTTGGACTTGTGACAGTTTTCCTGAGTTGTTCCTGTTTAAA
>XM_022675520.1
GTAACCTACTCACCCACACCAAAACAGGACCCGGCAGAGCAGACCAGCCAACCTAAACTGATacaatttacttatttataattTCAAGAGAAATAAGGACTAATCGAAGGGAACAAGACCCAATTACTGGAATTTAAACTGAATATGCCTAAACTGAAGAtggggtttgtgttttttttttttttgtcgtttgAAAATGTGATCTTCTAACATGTGTAACTGTGCTTAGTGTGACTCCATCATGGTGAGTAGTCGAATAACCAACTGGACACTGCACTGTACTGCTTTTTTAATATGTGTAGCCTAGCCTACAGACAGTCCACTGGTGCAAAACGATGCCATTCTCTGCTGTGAATAAATGTAGTCACAAGTAATGTCAGAAGTTTTCTCAGAATGTAAGAATGGCAGAGCCTGAGATGTCCAGAGATGACTGTGAATTATataagAACGTGTTTTGCAATCCAGCATTTGAGCCAGAAACTGACCATGTTGAAATCCAAGATTCATTTAAAGTTGCTATTTCTTCAGAACCTATAAAGAGGCCTGCAGCAAATGCAGGATACAGCAGcatactgagtgtgtgtgtggtgcgtcTGAGGGGTCTGTGGTGTAGCTGGGGGACGCTGGTAGTGTCTGCAGCTGTGCTGGTGTTGGTGGCTGTCCTGAGTCTTACTCTAGCTCTTGTTCTTACACAGTTAAATGAAGACTCCTCTGAAGAGGAAGTACTTTCTCCCCTGGACTTGTGGAGTGGTGTCACAGGTCCACCCAGTCTTGCCCCGAATCCCACCATTCCTCATCCTGCAATGAGCTCTGTGGCCCCACAGCTTGAGCAAGAGGCCACTACTTATAGAAAATGTGGTGGTGTCTTGACAGATTCAGAGGGTTCTATCAGCTCTCCTAACCACCCCGGTCCATACCCTCCTGActccatgtgtgtgtgggtaatcAGGGTGTCTCCTCCCTCTCTAGTCCAGCTCCATATCTCCTCCCTGGCTGTCGAGGGACCGTCCCCATGCCTCTTTGACTGGGTTGAGAtcagagaagaaagagagcagACCACCACAGTTAGCAGGTTCTGTGGCAATGTGGCTCCACCCACTGTGAACACCAATAGCAGCACTGTATGGCTGTCATTCCGGTCTGACAGCAGTATTGGGGGCAACGGCTTCATTGCGCAATACCATGCTATCCTTCCATGGCAAAAAAGCTGCTCCAGAGAGGAGTTCATGTGTGACAGTGGTCGCTGCCTGCTGCCTGTGTCTGTTTGTGACAGTCAGCCAAACTGCCAGGACCACACAGATGAAGCTAACTGCAGCCATAAACACAAGGAGTGTGGAGGCCAAAAGAAAGGACCAAGTGGTTCACTGTCTAGTCCAAATCACCCAAAACCTTATCCTCACCAGCAGCTGTGTACGTGGCGTATATCTGCTGAAGAGGGTCATGTTATCAGACTGAGGTTTCAGAACTTCAGTCTGGAGACTCAGGATGTTTGTGAATTTGACTATGTGGAGGTGCACGACAGCGCCAACACCGGAGATGGAAGGGTGCTCGGCAGGTTCTGTGGCTCAGGTCtcccacctgacctgacctCTTCTGGGCCAGTTATGACTGTGGTGTTTGTGGCAGATGAAGGTGTGGCTGACAGTGGCTTTTATGCTTCTTACCAGgtcatctctctctcagaaaGAACCTGCAGTCCTGATCAGTTTGCCTGTGCCACAGGAGAGTGTCTCCATCAGGATTGGCTATGTGATGGGTGGAATGACTGTGCAGATGGTGCAGATGAGCAAAACTGCAATAACTCCACCTACCCTCCATTCACTTCATCCTGTGAGCCCATTGAGGTGGAGATGTGCCAGGGTCTGAGCTATAACCTCACCTCTTTCCCCAACATTTGGCTCACCATTGCTGATCAGAGAGAGGCTGCCGAAATGCTGCACCAGTATAAAGTGCTGATGGAGCTGGCGTGTTTTGAACCCCTGAGGAAGCTGGTGTGTACCATGTTCTTACCACAGTGCAGCCTGCGAGGGGGCGTACTGCAGCCGTGCAGACCCGTTTGctcagcagcagagcagcagtgTAGCCGAGTGCTGGAACTCTTCAGTCTGACCTGGCCTTTTAACTGCCACCTGCTGCCGGACTCCCTCGACCCCATGGAGTGCTCCCTCCCttaacatatatacagctcaaaGTGTTTCACTGTGAACCATGACTTACAACACTTTAAGGTCGGTCTTTGCTGGTTGGAGTACCTTGCGGACTGGACTACTATTTGGACTTGTGACAGTTTTCCTGAGTTGTTCCTGTTTAAATGTGGTATTAAAAAGTGTACTTATCAGTATGCTTGACCTGTTTTAAa

Function

symbol description
mfrp Acts upstream of or within eye development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in ciliated epithelial cell and retinal pigmented epithelium. Used to study hyperopia and microphthalmia. Human ortholog(s) of this gene implicated in isolated microphthalmia 5; late-onset retinal degeneration; microphthalmia; nanophthalmos; and retinitis pigmentosa. Orthologous to several human genes including C1QTNF5 (C1q and TNF related 5).

NR:

description
PREDICTED: membrane frizzled-related protein

GO: NA

KEGG:

id description
K24359 MFRP; membrane frizzled-related protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU18257 False 694 TUCP 0.39 4 25668748 25673189
XM_022675520.1 True 2359 mRNA 0.48 13 25660898 25673236

Neighbor

gene id symbol gene type direction distance location
trim50 trim50 coding upstream 124928 25526943 ~ 25535970 (+)
LOC103044362 LOC108277440,LOC108426936 coding upstream 154854 25473577 ~ 25506044 (+)
LOC103043872 tfdp2,LOC108426935,LOC108277808,LOC107744026,LOC107704305,LOC107680101,LOC107720963 coding upstream 192209 25411286 ~ 25468689 (+)
rffl rffl coding upstream 260034 25382161 ~ 25400864 (+)
eif4h eif4h,LOC107704308 coding upstream 282276 25368694 ~ 25378622 (+)
LOC103047330 NA coding downstream 7162 25680398 ~ 25686643 (+)
LOC103047847 LOC103047847,LOC108426896 coding downstream 15818 25689054 ~ 25691155 (+)
LOC103021785 LOC103021785 coding downstream 20463 25693699 ~ 25698633 (+)
LOC103022406 ano7 coding downstream 31758 25704994 ~ 25721667 (+)
rnf168 NA coding downstream 49483 25722719 ~ 25729669 (+)
G13589 NA non-coding upstream 16535 25644013 ~ 25644363 (+)
G13565 NA non-coding upstream 152449 25508205 ~ 25508449 (+)
G13545 NA non-coding upstream 257780 25401020 ~ 25403118 (+)
G13520 NA non-coding upstream 362671 25294469 ~ 25298227 (+)
G13514 NA non-coding upstream 429055 25230982 ~ 25231843 (+)
G13607 NA non-coding downstream 26261 25699497 ~ 25703950 (+)
G13612 NA non-coding downstream 54071 25727307 ~ 25775610 (+)
LOC111194239 NA non-coding downstream 234505 25907741 ~ 25908666 (+)
G13733 nars2,LOC107670421,LOC107699825 non-coding downstream 330410 26003646 ~ 26006679 (+)
G13822 NA non-coding downstream 776031 26449267 ~ 26449469 (+)
LOC103045399 LOC108426937,LOC108277812 other upstream 18155 25561633 ~ 25642743 (+)
LOC103040166 LOC103040166,LOC108426893 other upstream 321463 25246996 ~ 25339435 (+)
G13445 spcs2,LOC107677086 other upstream 604795 25052513 ~ 25056103 (+)
G13237 NA other upstream 803876 24855933 ~ 24857022 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other upstream 938222 24700842 ~ 24722676 (+)
LOC103023549 gpr171 other downstream 115348 25788584 ~ 25795084 (+)
G14047 NA other downstream 1336312 27009548 ~ 27040529 (+)
LOC103031366 LOC105899914 other downstream 2376893 28050129 ~ 28077818 (+)
rbfox1 rbfox1 other downstream 2438810 28112046 ~ 28607089 (+)
G14444 NA other downstream 3455831 29129067 ~ 29129373 (+)

Expression


Co-expression Network