G13520


Basic Information

Item Value
gene id G13520
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25294469 ~ 25298227 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU18154
aaattgtcaattttattcaaaattcaattaaaaataagccAATGACATTTGTAACACGTTAAGAGAGAGTATAACAGTAAAGAAAGTCACGTGGTGGGTGTAACGCGTggtgagacgggaggcggacgtttaaacgggtaagacatgactttattaaataacaaataaacaagtaaacaaaacaggggaataacgaaaatatctatatacataaacaaacagggaaaaccaacaaagaactaagctaaactaaacagataataacaaaacaaggtaagggaatatatacaaaggaataatacgtaaatatatacaaaataaacaaagaaacaaacaagaactaaacgtgactagaaatatacaagaaataaagggaactagaaataaacaagaaacaagcagAGCGTGACGAAACCGTGAATAAACAATAGctaacgtggcgagacaaaacgacagaggaaggtgcaaagaccgacagcaaacgtagactaacaggtactatttatactaaacatgaaacaatgaacacctggggagacaggtaacgaggggcggagctacaaattagacacacgtgatggaaaagtac
>TU18155
aaattgtcaattttattcaaaattcaattaaaaataagccAATGACATTTGTAACACGTTAAGAGAGAGTATAACAGTAAAGAAAGTCACGTGGTGGGTGTAACGCGTggtgagacgggaggcggacgtttaaacgggtaagacatgactttattaaataacaaataaacaagtaaacaaaacaggggaataacgaaaatatctatatacataaacaaacagggaaaaccaacaaagaactaagctaaactaaacagataataacaaaacaaggtaagggaatatatacaaaggaataatacgtaaatatatacaaaataaacaaagaaacaaacaagaactaaacgtgactagaaatatacaagaaataaagggaactagaaataaacaagaaacaagcagAGCGTGACGAAACCGTGAATAAACAATAGctaacgtggcgagacaaaacgacagaggaaggtgcaaagaccgacagcaaacgtagactaacaggtactatttatactaaacatgaaacaatgaacacctggggagacaggtaacgaggggcggagctacaaattagacacacgtgatggaaaagtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18154 True 589 lncRNA 0.35 2 25294469 25298227
TU18155 False 589 lncRNA 0.29 2 25294469 25298227

Neighbor

gene id symbol gene type direction distance location
LOC111194299 NA coding upstream 132828 25148277 ~ 25161641 (+)
lipt2 lipt2,LOC107677087 coding upstream 207720 25072302 ~ 25086749 (+)
LOC103027752 NA coding upstream 312438 24980195 ~ 24982031 (+)
LOC103028424 LOC108425893 coding upstream 421343 24789276 ~ 24873126 (+)
kiaa0753 NA coding upstream 518008 24738891 ~ 24776461 (+)
eif4h eif4h,LOC107704308 coding downstream 70467 25368694 ~ 25378622 (+)
rffl rffl coding downstream 83934 25382161 ~ 25400864 (+)
LOC103043872 tfdp2,LOC108426935,LOC108277808,LOC107744026,LOC107704305,LOC107680101,LOC107720963 coding downstream 113059 25411286 ~ 25468689 (+)
LOC103044362 LOC108277440,LOC108426936 coding downstream 175350 25473577 ~ 25506044 (+)
trim50 trim50 coding downstream 228716 25526943 ~ 25535970 (+)
G13514 NA non-coding upstream 62626 25230982 ~ 25231843 (+)
G13504 NA non-coding upstream 110924 25183305 ~ 25183545 (+)
G13491 NA non-coding upstream 173949 25119489 ~ 25120520 (+)
G13462 NA non-coding upstream 235980 25057993 ~ 25058489 (+)
G13458 NA non-coding upstream 245396 25047338 ~ 25049073 (+)
G13545 NA non-coding downstream 102793 25401020 ~ 25403118 (+)
G13565 NA non-coding downstream 209978 25508205 ~ 25508449 (+)
G13589 NA non-coding downstream 345786 25644013 ~ 25644363 (+)
G13607 NA non-coding downstream 401270 25699497 ~ 25703950 (+)
G13612 NA non-coding downstream 429080 25727307 ~ 25775610 (+)
G13445 spcs2,LOC107677086 other upstream 238366 25052513 ~ 25056103 (+)
G13237 NA other upstream 437447 24855933 ~ 24857022 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other upstream 571793 24700842 ~ 24722676 (+)
G13067 NA other upstream 1439116 23853998 ~ 23855353 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 2776689 22473652 ~ 22517780 (+)
LOC103045399 LOC108426937,LOC108277812 other downstream 263406 25561633 ~ 25642743 (+)
mfrp mfrp other downstream 362671 25660898 ~ 25673236 (+)
LOC103023549 gpr171 other downstream 490357 25788584 ~ 25795084 (+)
G14047 NA other downstream 1711321 27009548 ~ 27040529 (+)
LOC103031366 LOC105899914 other downstream 2751902 28050129 ~ 28077818 (+)

Expression


Co-expression Network