LOC103043872 (tfdp2,LOC108426935,LOC108277808,LOC107744026,LOC107704305,LOC107680101,LOC107720963)


Basic Information

Item Value
gene id LOC103043872
gene name tfdp2,LOC108426935,LOC108277808,LOC107744026,LOC107704305,LOC107680101,LOC107720963
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25411286 ~ 25468689 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236747.3
CTCTCAGGAAGTGGAGCGGAGGGCCGAGAGAGGCAGCAGCAGGCAGCAGGCAGGCGCAGTGCGAGGAGCTCTTCTGCTGAAAAGTTGCTTCTTTGTGCTTCTGGGCTCCGTTTTCTGCAGTAACCGGGTGGAGAGCACGGACTGGACCTCAGGAGGCTGGAACGTTCTGAGGGTTTATAGAGGTGGTGATTAGAAGAATAAGCTTTGTCATATGTCTTATATGATGGCCAACACGgttggcGCTACACCTCTGTGCGCTGATTTGAAGGCATTTCTGAGTACACAGAACCTACCAAAAGgtAGTATTTCCCTTGTAACGCCGTCCAACTACAGTCCTGCCACCAAGATTACTTTAGGAGCAGTAAATTCCAATGTGGGAGCACAGACGATTATAAGCACACCTCAGAGAGTGGCTCATCCAGGAAGCATCCTCATCAGCAGCCccttcacaccacacactacacctgCTACTATGGTAACACAAGGACGCCCACCAGAAGGCAACGAATGGACACCAGGAAACAAGAAAAGGACACATGACTTTATAGACTCCTATTACTCTGATCGGGATGGACTGTGTTCGAGTGACTCCTCTTCAAGtaaaaGGATGAAGAAAACTGATAAGAATGGGAAGGGTCTCAGGCACTTTTCTATGAAGGTGTGTGAGAAGGTGCAGAAGAAAGGCACTACATCGTACAACGAGGTGGCAGACGAACTGGTGGCCGAGTTTGCCCATGCCAACCTGATGCACACAAATTCACAGGTGTATGACCAGAAGAACATCCGCAGACGTGTTTATGACGCATTGAATGTATTGATGGCCATGAACATTATCTCTAAAGAGAAGAAGGAGATTCGCTGGATCGGTCTGCCCACCAACTCGGCACAGGAATTTCGCAACCTGGAGTTGGAAAAGCAGAAACGGTTGGaaagaatcagacaaaaaaGAAGCCAGCTGGAGGAGCTTATACTACAGCAGATAGCCTTTAAGAACCTGGTGCGGAGGAACCAGGCCAACGAAGCATCGTCAAAATCGCCACCTCCACCCGGGTCTGTCATTCAGCTGCCCTTCATCATTCTTAATACGGACGTACGCACAGTCATCGACTGCTCCATCTCCAGTGACAAATGTGAATATCTCTTTAACTTTGACAATATGTTCGAGATTCACGATGACATCGAGGTTCTGAAGCGCATGGGCATGTCTCTGGGACTGGAGAACGGGAAATGCACCCAAGAAAACCTCAGTGTTGCCAAATCTCTTGTGCCTAAATCCTTGGAGACATATGTCACAGGAATGGCCAGAGGCACCAACAGAACACCTCCCAGCCACACAAGCCACAGTAGCTCTGTACCCTCACATACTCCAGAATCTCTGGGCCAGACACCGAGTTCCTTTAAtgaagaagatgatgatgacgaAGATGAGGACGACGACGACGACGACGAGCCATCCTCTCCGGAATGATCTCAAAGCACCAACTCGTTGGGCTGTCTCCTTGCTCTTCTCTGGGACTGGGCTTCCAACCCACCTTTCGACTGTCTGCCAAGTTACTGGTGGGACGCTACACAGGAAATAAGCTTCCACTTGCTCACAATGCGATTTTCCTTGACTCTCCTTCTACCTGTCTTACTTGCTCTCTGTCACTCATGCCAATGGCGACTAGGAGAACTGGTCAAGTTTTGCTCCAGTGGTGCTTTTCTACTCAAAGGTCAGGCAGTAGAAGAGGGAGAACGAGGATACTAGCAGAAATTTCACATTGGCAGGCTTGTGTAGTTTGTCGTACTGCCTCAAAACatcttttcataaaaaaatgtcaatgtatTTATTGCTTTCATATtctaatatgaaataattatcTTTGTAGTCCATTGTGTGTGTTGACAAGAGCTAAAGCCCAAATGTTCTTTTGTTTCTCGCCCCCAacgtgatgtaaaaaaaaaaaaaaaaaaatcaatgcattGATTTgtacctgtttctctgtttgttgACTGAAAGGATCTTGTGTGGTTTTCTCAAAAGGAAAAATCTTTCATATAAgagttatgttatttttttcccttaacaACTTTGTTGTGCATTATCTAGTTTGTGTTATTGCCATTTACTGCAATAGAATGAGTtgggggacaaaaaaaaatgaaataactgATGACCATATTTTTCTGGGTACATACGGCTTGAAGAGATGCATGCTGGGGAGTGAAGTGATTTTGTAAAGTGTGCTGTGTAGAGTAGCATCGTCTGCCAATGTCTAATTTTGCTAGAACTTTGTAAAGGATCTGAAAAGGCCTATATCCCACGGACACTGTGACCACCTCAGGTCAGTGTTTTAAACATGGAGTCTCATTTGAAAAACCAGCAGAATAATGAATACTACTTGTACTCTGATGGTTCCTATTTTTGGTTTGAAAATGTAACTATAATTTTGATTACC
>XM_007236748.3
AGACTTATGAAAGAGTTGTAGACAGAGGGAGAAAGGTGGAAAGTATGGAAGTGCTGCTCGTTCCTCTTCAGAAACAAGCAGgtAGTATTTCCCTTGTAACGCCGTCCAACTACAGTCCTGCCACCAAGATTACTTTAGGAGCAGTAAATTCCAATGTGGGAGCACAGACGATTATAAGCACACCTCAGAGAGTGGCTCATCCAGGAAGCATCCTCATCAGCAGCCccttcacaccacacactacacctgCTACTATGGTAACACAAGGACGCCCACCAGAAGGCAACGAATGGACACCAGGAAACAAGAAAAGGACACATGACTTTATAGACTCCTATTACTCTGATCGGGATGGACTGTGTTCGAGTGACTCCTCTTCAAGtaaaaGGATGAAGAAAACTGATAAGAATGGGAAGGGTCTCAGGCACTTTTCTATGAAGGTGTGTGAGAAGGTGCAGAAGAAAGGCACTACATCGTACAACGAGGTGGCAGACGAACTGGTGGCCGAGTTTGCCCATGCCAACCTGATGCACACAAATTCACAGGTGTATGACCAGAAGAACATCCGCAGACGTGTTTATGACGCATTGAATGTATTGATGGCCATGAACATTATCTCTAAAGAGAAGAAGGAGATTCGCTGGATCGGTCTGCCCACCAACTCGGCACAGGAATTTCGCAACCTGGAGTTGGAAAAGCAGAAACGGTTGGaaagaatcagacaaaaaaGAAGCCAGCTGGAGGAGCTTATACTACAGCAGATAGCCTTTAAGAACCTGGTGCGGAGGAACCAGGCCAACGAAGCATCGTCAAAATCGCCACCTCCACCCGGGTCTGTCATTCAGCTGCCCTTCATCATTCTTAATACGGACGTACGCACAGTCATCGACTGCTCCATCTCCAGTGACAAATGTGAATATCTCTTTAACTTTGACAATATGTTCGAGATTCACGATGACATCGAGGTTCTGAAGCGCATGGGCATGTCTCTGGGACTGGAGAACGGGAAATGCACCCAAGAAAACCTCAGTGTTGCCAAATCTCTTGTGCCTAAATCCTTGGAGACATATGTCACAGGAATGGCCAGAGGCACCAACAGAACACCTCCCAGCCACACAAGCCACAGTAGCTCTGTACCCTCACATACTCCAGAATCTCTGGGCCAGACACCGAGTTCCTTTAAtgaagaagatgatgatgacgaAGATGAGGACGACGACGACGACGACGAGCCATCCTCTCCGGAATGATCTCAAAGCACCAACTCGTTGGGCTGTCTCCTTGCTCTTCTCTGGGACTGGGCTTCCAACCCACCTTTCGACTGTCTGCCAAGTTACTGGTGGGACGCTACACAGGAAATAAGCTTCCACTTGCTCACAATGCGATTTTCCTTGACTCTCCTTCTACCTGTCTTACTTGCTCTCTGTCACTCATGCCAATGGCGACTAGGAGAACTGGTCAAGTTTTGCTCCAGTGGTGCTTTTCTACTCAAAGGTCAGGCAGTAGAAGAGGGAGAACGAGGATACTAGCAGAAATTTCACATTGGCAGGCTTGTGTAGTTTGTCGTACTGCCTCAAAACatcttttcataaaaaaatgtcaatgtatTTATTGCTTTCATATtctaatatgaaataattatcTTTGTAGTCCATTGTGTGTGTTGACAAGAGCTAAAGCCCAAATGTTCTTTTGTTTCTCGCCCCCAacgtgatgtaaaaaaaaaaaaaaaaaaatcaatgcattGATTTgtacctgtttctctgtttgttgACTGAAAGGATCTTGTGTGGTTTTCTCAAAAGGAAAAATCTTTCATATAAgagttatgttatttttttcccttaacaACTTTGTTGTGCATTATCTAGTTTGTGTTATTGCCATTTACTGCAATAGAATGAGTtgggggacaaaaaaaaatgaaataactgATGACCATATTTTTCTGGGTACATACGGCTTGAAGAGATGCATGCTGGGGAGTGAAGTGATTTTGTAAAGTGTGCTGTGTAGAGTAGCATCGTCTGCCAATGTCTAATTTTGCTAGAACTTTGTAAAGGATCTGAAAAGGCCTATATCCCACGGACACTGTGACCACCTCAGGTCAGTGTTTTAAACATGGAGTCTCATTTGAAAAACCAGCAGAATAATGAATACTACTTGTACTCTGATGGTTCCTATTTTTGGTTTGAAAATGTAACTATAATTTTGATTACC

Function

symbol description
tfdp2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of cell cycle and regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in brain and spinal cord. Orthologous to human TFDP2 (transcription factor Dp-2).

NR:

description
PREDICTED: transcription factor Dp-2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
K04683 TFDP1; transcription factor Dp-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236747.3 True 2438 mRNA 0.45 14 25411286 25468689
XM_007236748.3 False 2220 mRNA 0.44 12 25438350 25468689

Neighbor

gene id symbol gene type direction distance location
rffl rffl coding upstream 10422 25382161 ~ 25400864 (+)
eif4h eif4h,LOC107704308 coding upstream 32664 25368694 ~ 25378622 (+)
LOC111194299 NA coding upstream 249645 25148277 ~ 25161641 (+)
lipt2 lipt2,LOC107677087 coding upstream 324537 25072302 ~ 25086749 (+)
LOC103027752 NA coding upstream 429255 24980195 ~ 24982031 (+)
LOC103044362 LOC108277440,LOC108426936 coding downstream 4888 25473577 ~ 25506044 (+)
trim50 trim50 coding downstream 58254 25526943 ~ 25535970 (+)
LOC103047330 NA coding downstream 211709 25680398 ~ 25686643 (+)
LOC103047847 LOC103047847,LOC108426896 coding downstream 220365 25689054 ~ 25691155 (+)
LOC103021785 LOC103021785 coding downstream 225010 25693699 ~ 25698633 (+)
G13545 NA non-coding upstream 8168 25401020 ~ 25403118 (+)
G13520 NA non-coding upstream 113059 25294469 ~ 25298227 (+)
G13514 NA non-coding upstream 179443 25230982 ~ 25231843 (+)
G13504 NA non-coding upstream 227741 25183305 ~ 25183545 (+)
G13491 NA non-coding upstream 290766 25119489 ~ 25120520 (+)
G13565 NA non-coding downstream 39516 25508205 ~ 25508449 (+)
G13589 NA non-coding downstream 175324 25644013 ~ 25644363 (+)
G13607 NA non-coding downstream 230808 25699497 ~ 25703950 (+)
G13612 NA non-coding downstream 258618 25727307 ~ 25775610 (+)
LOC111194239 NA non-coding downstream 439052 25907741 ~ 25908666 (+)
LOC103040166 LOC103040166,LOC108426893 other upstream 71851 25246996 ~ 25339435 (+)
G13445 spcs2,LOC107677086 other upstream 355183 25052513 ~ 25056103 (+)
G13237 NA other upstream 554264 24855933 ~ 24857022 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other upstream 688610 24700842 ~ 24722676 (+)
G13067 NA other upstream 1555933 23853998 ~ 23855353 (+)
LOC103045399 LOC108426937,LOC108277812 other downstream 92944 25561633 ~ 25642743 (+)
mfrp mfrp other downstream 192209 25660898 ~ 25673236 (+)
LOC103023549 gpr171 other downstream 319895 25788584 ~ 25795084 (+)
G14047 NA other downstream 1540859 27009548 ~ 27040529 (+)
LOC103031366 LOC105899914 other downstream 2581440 28050129 ~ 28077818 (+)

Expression


Co-expression Network