LOC111194299


Basic Information

Item Value
gene id LOC111194299
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25148277 ~ 25161641 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677957.1
ATGTCTCAAGCCCAGGAAGAACACTACCTGGGGGCCTGGAGACGAGATAGAGGCGAAAGACTTGGATCACTCCAGAGAACTCTGCAACTCCAGCTGCCCTGTCATCTGCTTTTGCCTTCTCCCACTCTCCACGGCCAACCGGCAGGGGTGGTGGAACTGGCCTGCTTCTGTCTCaaCAATCTTCAGGATCCAAACCAGTCTGGCTTCAAACCTGCACACTCTACTGAAACTGCCCTCATTGCAGTTACAGAGAAGCTTCATGCAGCAAAAGCTATCAACCTGTCATCTGTTCTGATTCTCCTTGATCTCTCTGCTGCtttcgacacggtcaaccaTAGCATTCTCCTTTCCATCCTCACCAGCCTTGGaatcactggctctgcatggcagTGGTTTGCATCGTACCTGGAGGACCGTTCCTACCAGgtttcatcccgcatctcagcatgtctcagTGATGTCTCGATGTGCATGAGTTCTCATCACCTAAAACTCAACCCCAGcaagactgaccttctgttCATCCCAGGAACTACGAGCCTTCACaacaatctctccatctctttcgacaactcactggtcactccatcggCAGAAGCACAAAGCCTTGGtgtagtaatggatgaccagttatcattctcgagccatattgcaaatctgactcggtcatgcagatttctcctgtacaacatccgaagaattcgaccgtttctgtctcaggaagccactcaggtgcttgtgcagtctcttgtcatctcaagacttgactactgcaactctctactggctggtcttccactgagagccaccaaaccactacaattaattcagaatgctgcagcacgactcgtcttcaatcttccgaagttcagtcatgtgactcctttgctgcgttccctccactggcttcctgttgccgcccgcatccgattcaaaaccctgacgctggcctacaaggcaaaaaaccgaccagctccttcatacttgatggcgatggtcaaagccagatctgcaccaagagctcttagagcttccagtacggctcggcttgaacctccatcactcaaaacacacagaaaacagacatccagactcttctctgtgctggcaccaaggtggtggaatgaacttccactggatgtcagaacagcagagtcactcgccgtcttcaaacgtcgactgaagacacatctttttaaagagttcctaaactaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677957.1 True 1215 mRNA 0.50 4 25148277 25161641

Neighbor

gene id symbol gene type direction distance location
lipt2 lipt2,LOC107677087 coding upstream 61528 25072302 ~ 25086749 (+)
LOC103027752 NA coding upstream 166246 24980195 ~ 24982031 (+)
LOC103028424 LOC108425893 coding upstream 275151 24789276 ~ 24873126 (+)
kiaa0753 NA coding upstream 371816 24738891 ~ 24776461 (+)
tbx4 tbx4 coding upstream 589673 24519162 ~ 24558604 (+)
eif4h eif4h,LOC107704308 coding downstream 207053 25368694 ~ 25378622 (+)
rffl rffl coding downstream 220520 25382161 ~ 25400864 (+)
LOC103043872 tfdp2,LOC108426935,LOC108277808,LOC107744026,LOC107704305,LOC107680101,LOC107720963 coding downstream 249645 25411286 ~ 25468689 (+)
LOC103044362 LOC108277440,LOC108426936 coding downstream 311936 25473577 ~ 25506044 (+)
trim50 trim50 coding downstream 365302 25526943 ~ 25535970 (+)
G13491 NA non-coding upstream 27757 25119489 ~ 25120520 (+)
G13462 NA non-coding upstream 89788 25057993 ~ 25058489 (+)
G13458 NA non-coding upstream 99204 25047338 ~ 25049073 (+)
G13455 NA non-coding upstream 114901 25032901 ~ 25033376 (+)
G13214 NA non-coding upstream 422111 24723838 ~ 24726166 (+)
G13504 NA non-coding downstream 21664 25183305 ~ 25183545 (+)
G13514 NA non-coding downstream 69341 25230982 ~ 25231843 (+)
G13520 NA non-coding downstream 132828 25294469 ~ 25298227 (+)
G13545 NA non-coding downstream 239379 25401020 ~ 25403118 (+)
G13565 NA non-coding downstream 346564 25508205 ~ 25508449 (+)
G13445 spcs2,LOC107677086 other upstream 92174 25052513 ~ 25056103 (+)
G13237 NA other upstream 291255 24855933 ~ 24857022 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other upstream 425601 24700842 ~ 24722676 (+)
G13067 NA other upstream 1292924 23853998 ~ 23855353 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 2630497 22473652 ~ 22517780 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 85355 25246996 ~ 25339435 (+)
LOC103045399 LOC108426937,LOC108277812 other downstream 399992 25561633 ~ 25642743 (+)
mfrp mfrp other downstream 499257 25660898 ~ 25673236 (+)
LOC103023549 gpr171 other downstream 626943 25788584 ~ 25795084 (+)
G14047 NA other downstream 1847907 27009548 ~ 27040529 (+)

Expression


Co-expression Network