RNA id: XM_022677957.1


Basic Information

Item Value
RNA id XM_022677957.1
length 1215
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC111194299
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25148277 ~ 25161641 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTCTCAAGCCCAGGAAGAACACTACCTGGGGGCCTGGAGACGAGATAGAGGCGAAAGACTTGGATCACTCCAGAGAACTCTGCAACTCCAGCTGCCCTGTCATCTGCTTTTGCCTTCTCCCACTCTCCACGGCCAACCGGCAGGGGTGGTGGAACTGGCCTGCTTCTGTCTCaaCAATCTTCAGGATCCAAACCAGTCTGGCTTCAAACCTGCACACTCTACTGAAACTGCCCTCATTGCAGTTACAGAGAAGCTTCATGCAGCAAAAGCTATCAACCTGTCATCTGTTCTGATTCTCCTTGATCTCTCTGCTGCtttcgacacggtcaaccaTAGCATTCTCCTTTCCATCCTCACCAGCCTTGGaatcactggctctgcatggcagTGGTTTGCATCGTACCTGGAGGACCGTTCCTACCAGgtttcatcccgcatctcagcatgtctcagTGATGTCTCGATGTGCATGAGTTCTCATCACCTAAAACTCAACCCCAGcaagactgaccttctgttCATCCCAGGAACTACGAGCCTTCACaacaatctctccatctctttcgacaactcactggtcactccatcggCAGAAGCACAAAGCCTTGGtgtagtaatggatgaccagttatcattctcgagccatattgcaaatctgactcggtcatgcagatttctcctgtacaacatccgaagaattcgaccgtttctgtctcaggaagccactcaggtgcttgtgcagtctcttgtcatctcaagacttgactactgcaactctctactggctggtcttccactgagagccaccaaaccactacaattaattcagaatgctgcagcacgactcgtcttcaatcttccgaagttcagtcatgtgactcctttgctgcgttccctccactggcttcctgttgccgcccgcatccgattcaaaaccctgacgctggcctacaaggcaaaaaaccgaccagctccttcatacttgatggcgatggtcaaagccagatctgcaccaagagctcttagagcttccagtacggctcggcttgaacctccatcactcaaaacacacagaaaacagacatccagactcttctctgtgctggcaccaaggtggtggaatgaacttccactggatgtcagaacagcagagtcactcgccgtcttcaaacgtcgactgaagacacatctttttaaagagttcctaaactaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18117 lncRNA upstream 27757 25119489 ~ 25120520 (+) True G13491
TU18083 lncRNA upstream 89788 25057993 ~ 25058489 (+) True G13462
TU18079 lncRNA upstream 99204 25047338 ~ 25049073 (+) True G13458
TU18076 lncRNA upstream 114901 25032901 ~ 25033376 (+) True G13455
TU17750 lncRNA upstream 422111 24723838 ~ 24726166 (+) True G13214
TU18132 lncRNA downstream 21664 25183305 ~ 25183545 (+) True G13504
TU18144 lncRNA downstream 69341 25230982 ~ 25231843 (+) True G13514
TU18149 lncRNA downstream 85355 25246996 ~ 25338425 (+) False LOC103040166
TU18151 lncRNA downstream 85355 25246996 ~ 25338425 (+) False LOC103040166
TU18154 lncRNA downstream 132828 25294469 ~ 25298227 (+) True G13520
XM_015602313.2 mRNA upstream 61528 25072302 ~ 25086749 (+) False lipt2
XM_007236777.3 mRNA upstream 61528 25083829 ~ 25086749 (+) True lipt2
XM_007236783.3 mRNA upstream 166246 24980195 ~ 24982031 (+) True LOC103027752
XM_022675363.1 mRNA upstream 275151 24789276 ~ 24873126 (+) True LOC103028424
XM_022677946.1 mRNA upstream 371816 24738891 ~ 24776461 (+) True kiaa0753
XM_007236732.2 mRNA downstream 173279 25334920 ~ 25339435 (+) False LOC103040166
XM_022675409.1 mRNA downstream 173557 25335198 ~ 25339435 (+) True LOC103040166
XM_007236735.3 mRNA downstream 207053 25368694 ~ 25378622 (+) True eif4h
XM_015602311.2 mRNA downstream 207053 25368694 ~ 25378622 (+) False eif4h
XM_007236736.3 mRNA downstream 207053 25368694 ~ 25378622 (+) False eif4h
TU18064 other upstream 92174 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 291255 24855933 ~ 24857022 (+) True G13237
TU17745 other upstream 431051 24714351 ~ 24717226 (+) False ccdc9
TU17747 other upstream 431051 24715890 ~ 24717226 (+) False ccdc9
TU17542 other upstream 1292924 23853998 ~ 23855353 (+) True G13067
TU18257 other downstream 507107 25668748 ~ 25673189 (+) False mfrp
TU18843 other downstream 1847907 27009548 ~ 27040529 (+) True G14047
TU19049 other downstream 2888488 28050129 ~ 28056900 (+) False LOC103031366
TU19373 other downstream 3967426 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 4233519 29395160 ~ 29398166 (+) True G14480

Expression Profile