RNA id: TU17750


Basic Information

Item Value
RNA id TU17750
length 2174
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G13214
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24723838 ~ 24726166 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttgaaGACTGAAGACATTAATACATGTCcaagtatttttgttttttcagttttatttttaaatctagaGACTCTGATCTGATATCTTCATCTTCTAAAAATCAGTATAGAAGCTCTAATGGCTTTGTTTCACTGCCCAGTCCACCGTAATCAATTCTTATATTTCTCtaaatctgattactgctgcACATTAACAGGGTTTAATAGGGAGGAAATTGCAGAAAAGCTTTTATATGGAAAGTGTGGTGTGGTCGGCCTGGCCGGTGGGTGGTAATGGAAACCTGGAGGAGATAGAATAACTCATTCACTGTCTTTAATTGATTACTGGATGTTTCCTCTTAGTGGTTTTGGAGAACACacacatgtttatttgtgtattttgctAAATCCTAGGACGTGTTCACACCAGCACCTTTTAGTCTGTTTAAATCACTGGATCAGGACTCTGGATCAGTTCCACTTTTGGTGCAATTCATTTTGGCAGATTTTGAATACAGTAATCATACCTGGATGcaaactgaagttttttttatacaggcAGTATACAGTAACCCAGACCATTTCAGAACATTACCTGTATCAGGACCCAAACTTCATCCTTCTGACCCCCAAATATAAACTCTAGGTTATTTGTAAATAAACCCGTGTGTAAATAGAGCAGGTAATGATCTGTATTATTCACATTGGCTATGTTTACATGCAAAGCCATTCTAGAATCTGACTGAGGTGTTCATATAAACACTTTCCCCAAGAGTCTGAGGAAACTATGCGTTTATATTCACGCTACAGTAATCTGATTAAACATGATGCAGTGCATGACAACTAACATCAAGTGATGCCAACCAGCCCAGAGCTGAGAAAGGGCCCAAAAACTCCAGCCTGATCCGGCCATTTGAGTCTGAGCCCGAATTAACCCCCTCATTTTTTAGTCTacatctactctaatataattgaCAGTgtttacaaatataaaacactttctgaacaaacgagtttatttattctaaacatacagcctatagcaaaacacataaaactgcAATAAGACTATGCTTGGACAAGCGGAGGAGCTGATGTGTGCTCAGTGTTCACTGCAGTTCAAGAGCTGTGTGATTATAGCATTCAAacttgtgcatttttttaaaaacatggttTGATTAgttatttttctatattgtgTACTCTGAGTTTATTCAGGTGTATTTCATgagaaaaagcacaaaataacaCAGTGTGGGCTCCAGCACTGGGAGAGGCACCTTCTGCCTTCTACGGGTCACTATTACagttgggttagggttagaattattataatactgtatttgttaATTTTGTACATCAGGTAAATTTTTAGGGACGAGCAGCTCTTTTATAGAACctggataaagagagagaaagagaggatcGAAATATGTATAATTCATAACCTATAGCAGTTATTGAACTGAATGCAGTTTTATCACATCAGTTGCAATCTTGCAGTCATGCGTCTCTGTCTTAATAACAGCACTGTTATTTTCTGtccagaaagaaagaaaaacgtttgctatttttctttccagGAAATTACATAGAGTATCTGTGTATCCATGTGTACCCAGTCAGTCAAAAAGTGGACTAAAATGGAGAGTAACCACAGGATAATCCTGACCTGATTTATACTGATTCTGTTATTAGAGAACAGAGAAAGCAGAATTATTAACAAGCTTTACAGGCTTATCTGTACTCACTCTATTTTATAAAGGTGatttaaagggtctgtgagCAGTGCTATAGAAGGACTAtagatgcactgaatatttgacAACCACCCACagcataaaacattatttataaatattaaatattttagtatttatttactgaatcCTGCTTTTTAAGCACATTACCGAGAAACAgagcttttatatattttttttcatcactacaaatatatatatttttttatcactagAACTAAACCACTTACAACAGTACAGTAAAATTGGGATTTATCGCACAGCTCTGTTTTCCCGTTTTTGTTGTTtcgatttgtttgtttttagtaaaaGGTTTGATTTTGGCCAAAAAGGTTCACTTCAGTGCAAGAACCCATCAAGAACCATTTTGGTTAGAGAGATATATGTGAAGAACCTCTAAAGAAAAGGTCAAAGAAATGGATACGAAGATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17748 lncRNA upstream 9875 24713326 ~ 24713963 (+) True G13212
TU17729 lncRNA upstream 36087 24647283 ~ 24687751 (+) True G13197
TU17692 lncRNA upstream 325186 24393299 ~ 24398652 (+) True G13167
TU17682 lncRNA upstream 368868 24345710 ~ 24354970 (+) False G13159
TU17684 lncRNA upstream 368868 24354067 ~ 24354970 (+) True G13159
TU18076 lncRNA downstream 306735 25032901 ~ 25033376 (+) True G13455
TU18079 lncRNA downstream 321172 25047338 ~ 25049073 (+) True G13458
TU18083 lncRNA downstream 331827 25057993 ~ 25058489 (+) True G13462
TU18117 lncRNA downstream 393323 25119489 ~ 25120520 (+) True G13491
TU18132 lncRNA downstream 457139 25183305 ~ 25183545 (+) True G13504
XM_022675359.1 mRNA upstream 1162 24700842 ~ 24722676 (+) True ccdc9
XM_022675350.1 mRNA upstream 165234 24519162 ~ 24558604 (+) True tbx4
XM_007258875.3 mRNA upstream 228381 24486822 ~ 24495457 (+) True tbx2
XM_022675293.1 mRNA upstream 250292 23949391 ~ 24473546 (+) False bcas3
XM_022677946.1 mRNA downstream 12725 24738891 ~ 24776461 (+) True kiaa0753
XM_022675363.1 mRNA downstream 63110 24789276 ~ 24873126 (+) True LOC103028424
XM_007236783.3 mRNA downstream 254029 24980195 ~ 24982031 (+) True LOC103027752
XM_015602313.2 mRNA downstream 346136 25072302 ~ 25086749 (+) False lipt2
XM_007236777.3 mRNA downstream 357663 25083829 ~ 25086749 (+) True lipt2
TU17745 other upstream 6612 24714351 ~ 24717226 (+) False ccdc9
TU17747 other upstream 6612 24715890 ~ 24717226 (+) False ccdc9
TU17542 other upstream 868485 23853998 ~ 23855353 (+) True G13067
TU16886 other upstream 2211202 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 2338866 22329719 ~ 22384972 (+) False spa17
TU17784 other downstream 129767 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 326347 25052513 ~ 25056103 (+) True G13445
TU18257 other downstream 942582 25668748 ~ 25673189 (+) False mfrp
TU18843 other downstream 2283382 27009548 ~ 27040529 (+) True G14047
TU19049 other downstream 3323963 28050129 ~ 28056900 (+) False LOC103031366

Expression Profile