RNA id: TU17542


Basic Information

Item Value
RNA id TU17542
length 380
RNA type TUCP
GC content 0.54
exon number 2
gene id G13067
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23853998 ~ 23855353 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctccgaatagctagagccaagctctcccgggggatcagagaggcaaagcgcacctacgcaaagaaaatccacgcccacttccaggacactactgacactcggcgcatgtggcagggcatccagaccatcaccaactacaagtcaccctcccctgcttgtaacagtgatgcctcccttccagatgcactgaactccttctacgcaaggttcgaagcacagaactacacgacagcaaggaagactacacctcctccaaatgaccaggtactgtgcctgtcctcagctgatgtgcggaaaactctactcagagtcagaaagcacatctcccaccccccatcctcaccatgttctacagagggactgtaaaaagcatcctgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17540 lncRNA upstream 10723 23840288 ~ 23843275 (+) True G13065
TU17522 lncRNA upstream 84386 23766485 ~ 23769612 (+) True G13051
TU17512 lncRNA upstream 129564 23710556 ~ 23724434 (+) True G13043
TU17495 lncRNA upstream 143460 23610250 ~ 23710538 (+) True G13028
TU17462 lncRNA upstream 202760 23647792 ~ 23651238 (+) True G13012
TU17543 lncRNA downstream 1638 23856991 ~ 23857360 (+) True G13068
TU17544 lncRNA downstream 2249 23857602 ~ 23857916 (+) True G13069
TU17587 lncRNA downstream 115894 23971247 ~ 23971794 (+) True G13103
TU17592 lncRNA downstream 144758 24000111 ~ 24019447 (+) True G13105
TU17593 lncRNA downstream 186374 24041727 ~ 24122312 (+) True G13106
XM_007258871.3 mRNA upstream 103868 23745184 ~ 23750130 (+) True rnf26
XM_022675213.1 mRNA upstream 215786 23556718 ~ 23638212 (+) True cbl
XM_022675217.1 mRNA upstream 216994 23556717 ~ 23637004 (+) False cbl
XM_022675203.1 mRNA upstream 353769 23148011 ~ 23500229 (+) True LOC103034742
XM_022675174.1 mRNA upstream 1239489 22533679 ~ 22614509 (+) True LOC103038567
XM_022675324.1 mRNA downstream 41139 23896492 ~ 23909676 (+) True LOC103047782
XM_022675331.1 mRNA downstream 41192 23896545 ~ 23909676 (+) False LOC103047782
XM_022675283.1 mRNA downstream 94038 23949391 ~ 24473546 (+) True bcas3
XM_022675286.1 mRNA downstream 94038 23949391 ~ 24473546 (+) False bcas3
XM_022675293.1 mRNA downstream 94038 23949391 ~ 24473546 (+) False bcas3
TU16886 other upstream 1341362 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 1469026 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 1512485 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 2390349 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 2877721 20976204 ~ 20976277 (+) True trnan-guu
TU17745 other downstream 858998 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 860537 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 1000580 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 1197160 25052513 ~ 25056103 (+) True G13445
TU18257 other downstream 1813395 25668748 ~ 25673189 (+) False mfrp

Expression Profile