LOC103034742 (grik4,LOC108439963,LOC108277597)


Basic Information

Item Value
gene id LOC103034742
gene name grik4,LOC108439963,LOC108277597
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23148011 ~ 23500229 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675203.1
CATCCTCGATGATCCAATGGAGTGCAGCCGAGGGGAGCGGTTGGCCATCACTCTGGCAAAAGACAGCATCAACCGCTCCAGCAACCGCTCCACCACGGGCAAGCTGGAGGTGGACATCTTTGAGCTGCTGAGGGACAGCGAATATGAGACAGGAGAGACTATGTGCCAGATCATGTCTAAGGGGGTGGTGGCGGTCCTCGGCCCTTCTGCCAGCCCGGCGTCCAACTCCATCATCAGCAATATCTGTGGAGAGAAAGAGGTGCCGTACGTGAAGGTGGCTCCAGAGGACATCCTGAAGGTACAGTTCCCCCGATTCACCACGCTGGACCTCAGACCCACCAATACTGATGTGAGCCTAGCTGTGGCCGGCCTTCTCACCTTCTTCAACAGCACCACGTCCTGCCTCATCTGCGCCCAGGCCAACTGCCTATTAAACCTGGAGGTGTTGCTGCGACAGTTCCTCATCTCTAAGGAGACCCTCTCGGTACGCATGCTGGACGACAGCCAGGACCCCACCCCCCTCCTCAAAGAGATCCGAGACGAcaagaccgccaccatcatcgTCGACGCTAACGCCACCATGTCTCACATCATCCTCGAGAGGgCATCAGAGTTGGGCATGCTCTCCGTCTACTACACCTACATCTTCACCTCTCTGGAGTTCTCTCTGCTGAGACTGGATGATGTAGCTGATCAGCGGGTGAACATCGTTGGCTTCTCTGTCTTCAACAGGACACACCCCTTCTTCCAGGACTTTCTTCTTAGCCTCAACCGCTCCTGGCAGGAGAACTGTGACCACGCCCCTTTCGCAGGGACACCGctgTCATCGGCGCTGCTGTTTGATGCAGTACACACTGTAGTTGCAGCAGTGCAGGAGTTAAACCGCAGCCAGAATGTCGGCGCCACCCAGCTGTCCTGCAAGTCCTCTAAAATCTGGGAGCACGGGACCAGCCTGATGAACTACCTGAGGATGGTAGAATTGGAAGGTCTAACGGGCCACATCGAGTTCAACAGCAAGGGCCAGCGCTCCAACTACGCCCTGCGGATCATGCAGAACAGCAGGGACGGTCTCAGGCAGATTGGCCAGTGGCACTCGGAGCAGGGTCTATCCATGGAGAGAAAGCTTCCCTCACTCAATGTGACAGATACGCTCTTCAACACCACgctcatcatcaccaccatcctGGAGAATCCCTATGTGATGCTGAGATCCAACTACCAGGAGCTGGAGGGGAACGAGCGCTATGAGGGGTTCTGTGTGGACATGCTGAAGGAACTGGCCGACATCCTGAAGTTTAAGTACCGCATCAAGCTCGTGAGCGATGGGGTGTACGGAGTTTCCGGAGCTAACGGAACCTGGACGGGAATGGTGGGAGAATTAATCGCCAGGaagGCTGACCTGGCCGTGGCTGGACTGACCATCACGGCTGAGAGGGAGAAGGTCATTGATTTCTCCAAGCCCTTCATGACTCTGGGAATTAGCATCATGTACCGGGTGCACATGGGAAGAAGACCGGGGTATTTTTCCTTCCTGGACCCGTTCTCTCCAGGGGTCTGGCTCTTCATGCTGCTGGCATATCTGGCTGTTAGCTGTGTGCTTTTTCTGGTTGCCAGACTCACCCCCTACGAGTGGTACAATCCGCACCCCTGCCTGAAGGGACGGTGCAGTCTGCTGATTAACCAGTACTCTCTGGGGAACAGCTTCTGGTTCCCCGTCGGGGGCTTCATGCAGCAGGGCTCCACCATCGCCCCCAGAGCGCTGTCCACACGCTGTGTCAGCGGAGTATGGTGGGCGTTTACCCTGATCATCATCTCTTCCTACACGGCCAACCTGGCCGCCTTCCTCACTGTGCAGAGGATGGAGGTTCCCATAGAGTCCGTGGACGACCTGGCGGATCAGACGGCTATAGAGTATGGCACCATGCATGGCGGATCCACCATGACCTTCTTCCAGaACTCCCGTTATCAGACGTATCAGCGCATGTGGAACTTCATGCACTCTAAGCAGCCCAGCGTGTTCGTGAAGAGCACGGAGGAGGGCATCGCCCGTGTGCTGAACTCCAACTACGCCTACCTGCTGGAGAGCACCATGAACGAGTACTACAGACAGCGCAACTGCAACCTCACGCAGATAGGAGGTCTGCTGGACACCAAGGGCTACGGCATCGGCATGCCTCTGGGCTCAGTGTATCGGGATGAGTTTGATCTGGCGATCCTCAGACTGCAGGAGGAGAACCGGCTGGAGATCCTCAAAAGAAAGTGGTGGGATGGTGGAAAGTGTCCGAAAGAGGAGGACCATCGAGCCAAAGGTCTCGGCATGGAGAACATCGGTGGGATCTTCGTGGTGCTGGTGTGTGGTCTGTTAGTAGCTATCTtcatggctgtgctggagtttgtATGGATGCTGCGTCAGACTCCAGGAACAGAGGTGAGAGAGGACTATTTTACCTGCCTCTGCTTTATGTCCTTCTCCCCGCCCACGAGCCTTTCCTCCTGAGCCCTTTCCCCATGTCCAGCCCCACCCGGCCCTCCAGCCTTACAGCACAAACACCACAGAGCTTACCTCACACAGGTGCACTGAGTCCACGGGTCTCCACTGGCCTGTACCTGCTCTACAGGTAGTACTCAGGGGTTCATTGCTACCTTTATAGAGTTCAGTTTAacttttaactgtatttttcgcactataaggtgcactggattgtaaggcacattttatgtgacactagtaaggaacaggggtggcgAGACCTATAAAGCTAAgccaagttaagtaaacaaaactgtaattctaaagaaaaaaacattttcaacaagcgctggatgttaatc

Function

symbol description
grik4 Predicted to enable kainate selective glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in postsynaptic membrane and presynaptic membrane. Orthologous to human GRIK4 (glutamate ionotropic receptor kainate type subunit 4).

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 4-like

GO: NA

KEGG:

id description
K05204 GRIK4; glutamate receptor, ionotropic kainate 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675203.1 True 2832 mRNA 0.55 17 23148011 23500229

Neighbor

gene id symbol gene type direction distance location
LOC103038567 LOC108436528 coding upstream 533502 22533679 ~ 22614509 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding upstream 618728 22521242 ~ 22529283 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding upstream 712577 22406379 ~ 22435434 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding upstream 757010 22352369 ~ 22391001 (+)
LOC111194234 NA coding upstream 829559 22309352 ~ 22318452 (+)
cbl cbl coding downstream 56488 23556717 ~ 23638212 (+)
rnf26 rnf26 coding downstream 244955 23745184 ~ 23750130 (+)
LOC103047782 phykpl,LOC108439974,LOC108277665,LOC107743705,LOC107683819,LOC107585546 coding downstream 396263 23896492 ~ 23909676 (+)
bcas3 bcas3,LOC107743646,LOC107664928 coding downstream 449162 23949391 ~ 24473546 (+)
tbx2 tbx2,tbx2b,LOC107685069,LOC107757046 coding downstream 986593 24486822 ~ 24495457 (+)
G12953 NA non-coding upstream 54847 23092744 ~ 23093164 (+)
G12950 NA non-coding upstream 56179 23091632 ~ 23091832 (+)
G12907 NA non-coding upstream 165632 22982180 ~ 22982379 (+)
G12702 NA non-coding upstream 177917 22897811 ~ 22970094 (+)
G12694 NA non-coding upstream 213800 22887346 ~ 22934211 (+)
G13008 NA non-coding downstream 2386 23502615 ~ 23510082 (+)
G13007 NA non-coding downstream 12506 23512735 ~ 23570534 (+)
LOC103032198 NA non-coding downstream 21722 23521951 ~ 23528989 (+)
G13012 NA non-coding downstream 43326 23543555 ~ 23651238 (+)
G13025 NA non-coding downstream 71812 23572041 ~ 23620197 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 630231 22473652 ~ 22517780 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 763039 22300996 ~ 22384972 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 1684362 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 2157947 20963049 ~ 20990064 (+)
G13067 NA other downstream 353769 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 1200613 24700842 ~ 24722676 (+)
G13237 NA other downstream 1355704 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 1552284 25052513 ~ 25056103 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 1746767 25246996 ~ 25339435 (+)

Expression


Co-expression Network