LOC103032198


Basic Information

Item Value
gene id LOC103032198
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23521951 ~ 23528989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17477
tgcagctgctgcagcgCATCAGCGGGAGAACTTCTACAGCAGGATGCAGCCAGGTGCATTGTGGGAATGATCAGCAAGAATTGGGAGTCTCCATCTCAAAAAGGGTTTTAGTGGAGTAACTGCGCAGGTTAAAGGGTGAAGAGACAGTGCTGAAGGCGTTCCCCTGCTGTTCCTCACAAAAACAGGACTTCATTTAACACCACAGAACAGTGCTGTGGAAGCCGTCTGATCCTGAGATCTTGTATTTGCAGCTCCGTTTGAGGAACCCTGATCTCctcatccatctctccatcacaCCATCCACCTCCTAAACACAGGAGAAAAGAACAGAGCACTCAGTACTGGACTCTCCTGGACATCAAACAACATTGAGAgatataattacaataaatgttacatgatgataaaatatttatgaTGCACTGTTTGATTGTATCTTGTTGAGTCGTGTTTTTTATAAGAGATTTTCTTTAATATGACGATCATTTGACCACATGCTGTTGTCAG
>XR_455597.3
ATCGCCTCGCGAGACGCTGATCAGTgaggtgattggctgcagctgctgcagcgCATCAGCGGGAGAACTTCTACAGCAGGATGCAGCCAGGTGCATTGTGGGAATGATCAGCAAGAATTGGGAGTCTCCATCTCAAAAAGGGTTTTAGTGGAGTAACTGCGCAGGTTAAAGGGTGAAGAGACAGTGCTGAAGGCGTTCCCCTGCTGTTCCTCACAAAAACAGGACTTCATTTAACACCACAGAACAGTGCTGTGGAAGCCGTCTGATCCTGAGATCTTGTATTTGCAGCTCCGTTTGAGGAACCCTGATCTCctcatccatctctccatcacaCCATCCACCTCCTAAACACAGGAGAAAAGAACAGAGCACTCAGTACTGGACTCTCCTGGACATCAAACAACATTGAGAgatataattacaataaatgttacatgatgataaaatatttatgaTGCACTGTTTGATTGTATCTTGTTGAGTCGTGTTTTTTATAAGAGATTTTCTTTAATATGACGATCATTTGACCACATGCTGTTGTCAGGAGTTtacagagatgtatagtaaaaATTCTGTATTTACTGAACAATATATTTGGTCtgaaaaactcttttttacattgtcttctattaagtttagaagtttttttctctctcctgtaaagttgctgttttggagatacttgtttttcatccaTATTCTATCTAATAAGATACAGGAAAATGCTATTTATCTGTATTTGAAccttaaattataatatatattcttgTTACATTCTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17477 False 507 lncRNA 0.47 4 23521988 23528752
XR_455597.3 True 781 lncRNA 0.39 4 23521951 23528989

Neighbor

gene id symbol gene type direction distance location
LOC103034742 grik4,LOC108439963,LOC108277597 coding upstream 21722 23148011 ~ 23500229 (+)
LOC103038567 LOC108436528 coding upstream 907442 22533679 ~ 22614509 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding upstream 992668 22521242 ~ 22529283 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding upstream 1086517 22406379 ~ 22435434 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding upstream 1130950 22352369 ~ 22391001 (+)
cbl cbl coding downstream 27728 23556717 ~ 23638212 (+)
rnf26 rnf26 coding downstream 216195 23745184 ~ 23750130 (+)
LOC103047782 phykpl,LOC108439974,LOC108277665,LOC107743705,LOC107683819,LOC107585546 coding downstream 367503 23896492 ~ 23909676 (+)
bcas3 bcas3,LOC107743646,LOC107664928 coding downstream 420402 23949391 ~ 24473546 (+)
tbx2 tbx2,tbx2b,LOC107685069,LOC107757046 coding downstream 957833 24486822 ~ 24495457 (+)
G13008 NA non-coding upstream 11869 23502615 ~ 23510082 (+)
G12999 NA non-coding upstream 73679 23447993 ~ 23448272 (+)
G12992 NA non-coding upstream 136604 23384132 ~ 23385347 (+)
G12977 NA non-coding upstream 312659 23207892 ~ 23209292 (+)
G12953 NA non-coding upstream 428787 23092744 ~ 23093164 (+)
G13012 NA non-coding downstream 14566 23543555 ~ 23651238 (+)
G13025 NA non-coding downstream 43052 23572041 ~ 23620197 (+)
G13028 NA non-coding downstream 81261 23610250 ~ 23710538 (+)
G13029 NA non-coding downstream 93235 23622224 ~ 23646835 (+)
G13043 NA non-coding downstream 181567 23710556 ~ 23724434 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 1004171 22473652 ~ 22517780 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 1136979 22300996 ~ 22384972 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 2058302 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 2531887 20963049 ~ 20990064 (+)
G13067 NA other downstream 325009 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 1171853 24700842 ~ 24722676 (+)
G13237 NA other downstream 1326944 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 1523524 25052513 ~ 25056103 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 1718007 25246996 ~ 25339435 (+)

Expression


Co-expression Network