G13029


Basic Information

Item Value
gene id G13029
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23622224 ~ 23646835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17496
tagttagttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaaaaaaattatttgtctctctgtgtcaaAATTTTCTCTAGCTGGACCCCACTGAATTCTGATTAAATACTTCTGCTCTATAGCCTCGCTCCTACACACAAAGGCTGTGCGTAACAATAGAGCCCACACGCATTGTCCTTTTCAGATAAGATGCCTACTATACATTCTCACGCAACAGCGGCCCGGTCCGTGCGACCGTTCAGCACACGAGCAGAGTTAGATAATCAGTAGTAGAGACGGAGGCATACAGGGGGCGATTCACACTCCATCAGAAAGACCTCGCTCTCCCAGTGGATCTCAGAACAGCTTGGTACCTTCCATCAATAGTCGTATTGTAGAACCTCCGATGATGTCACAGAACAGTTCTCgcaaaagagaagagaagccaTCATAAGACGACCTGTAATCCAGCCAGAGCTCATACATATTCATCAGAGAGCGGCTCTGTATCTGCAGCCTTCTAAGGTCTGCTCCCTGAGAAACATCTGATCCAAACCTGATCaaattatacaattttataaaatctataaaaaaaaatatattgattatagtaattaaaaaaatgtatccgattaatcaaaacaaaatcctgtgattaactgcgatgtaaataaaagactgaatgtaagaaatgtaaaatgcaattatatgtatattagtggtgtcagttaaaataatagtaaatacttGTATATttaaggggggaaaaaaatcaacgtatggtgctggaataaagaatgcatgataaattggattgagagcgagagagagaaagagaaatagagagaaatagacagagagtgatagagagagagaaaaaatatatatatatatatatagag
>TU17497
tagttagttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaaaaaaattatttgtctctctgtgtcaaAATTTTCTCTAGCTGGACCCCACTGAATTCTGATTAAATACTTCTGCTCTATAGCCTCGCTCCTACACACAAAGGCTGTGCGTAACAATAGAGCCCACACGCATTGTCCTTTTCAGATAAGATGCCTACTATACATTCTCACGCAACAGCGGCCCGGTCCGTGCGACCGTTCAGCACACGAGCAGAGTTAGATAATCAGTAGTAGAGACGGAGGCATACAGGGGGCGATTCACACTCCATCAGAAAGACCTCGCTCTCCCAGTGGATCTCAGAACAGCTTGGTACCTTCCATCAATAGTCGTATTGTAGAACCTCCGATGATGTCACAGAACAGTTCTCgcaaaagagaagagaagccaTCATAAGACGACCTGTAATCCAGCCAGAGCTCATACATATTCATCAGAGAGCGGCTCTGTATCTGCAGCCTTCTAAGGTCTGCTCCCTGAGAAACATCTGATCCAAACCTGATCaaattatacaattttataaaatctataaaaaaaaatatattgattatagtaattaaaaaaatgtatccgattaatcaaaacaaaatcctgtgattaactgcgatgtaaataaaagactgaatgtaagaaatgtaaaatgcaattatatgtatattagtggtgtcagttaaaataatagtaaatacttGTATATttaaggggggaaaaaaatcaacgtatggtgctggaataaagaatgcatgataaattggattgagagcgagagagagaaagagaaatagagagaaatagacagagagtgatagagagagagaaaaaatatatatatatatatatagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17496 True 906 lncRNA 0.38 2 23622224 23646212
TU17497 False 906 lncRNA 0.38 2 23622224 23646835

Neighbor

gene id symbol gene type direction distance location
LOC103034742 grik4,LOC108439963,LOC108277597 coding upstream 121995 23148011 ~ 23500229 (+)
LOC103038567 LOC108436528 coding upstream 1007715 22533679 ~ 22614509 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding upstream 1092941 22521242 ~ 22529283 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding upstream 1186790 22406379 ~ 22435434 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding upstream 1231223 22352369 ~ 22391001 (+)
rnf26 rnf26 coding downstream 98349 23745184 ~ 23750130 (+)
LOC103047782 phykpl,LOC108439974,LOC108277665,LOC107743705,LOC107683819,LOC107585546 coding downstream 249657 23896492 ~ 23909676 (+)
bcas3 bcas3,LOC107743646,LOC107664928 coding downstream 302556 23949391 ~ 24473546 (+)
tbx2 tbx2,tbx2b,LOC107685069,LOC107757046 coding downstream 839987 24486822 ~ 24495457 (+)
tbx4 tbx4 coding downstream 872327 24519162 ~ 24558604 (+)
G13025 NA non-coding upstream 2027 23572041 ~ 23620197 (+)
G13007 NA non-coding upstream 51690 23512735 ~ 23570534 (+)
LOC103032198 NA non-coding upstream 93235 23521951 ~ 23528989 (+)
G13008 NA non-coding upstream 112142 23502615 ~ 23510082 (+)
G12999 NA non-coding upstream 173952 23447993 ~ 23448272 (+)
G13043 NA non-coding downstream 63721 23710556 ~ 23724434 (+)
G13051 NA non-coding downstream 119650 23766485 ~ 23769612 (+)
G13065 NA non-coding downstream 193453 23840288 ~ 23843275 (+)
G13068 NA non-coding downstream 210156 23856991 ~ 23857360 (+)
G13069 NA non-coding downstream 210767 23857602 ~ 23857916 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 1104444 22473652 ~ 22517780 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 1237252 22300996 ~ 22384972 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 2158575 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 2632160 20963049 ~ 20990064 (+)
G13067 NA other downstream 207163 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 1054007 24700842 ~ 24722676 (+)
G13237 NA other downstream 1209098 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 1405678 25052513 ~ 25056103 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 1600161 25246996 ~ 25339435 (+)

Expression


Co-expression Network