G13008


Basic Information

Item Value
gene id G13008
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23502615 ~ 23510082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17454
atcttcctcttgattatattccagaggtttttaatttggtaaaatcaaagaaactcatcatttttaagtgctctcttattttttttccagagttgtacaGTGTAATGGGAACAATTGTGacaacattgttattttaagtaGCACAAAAATGGTTAGAGGGGTCGTAAGGAGAGGACATGGCATCCCTCAGGACCTCAACAGGTATTGGAAAGCTTGTCATGCTGCTAAACTAACAGGTTTCCACAGCCGCCGAAGATCATCCCAACTATCTGAGTGACTGTAAGGCTTTATTTTGAGGAACATTTATTTGAGATAAACTAAGGGGTTGCTCTTTGTTCAGAAAAGACGAAATTAGGGGCTATTATGAAGCTGAAACTCTATTATACTATTGTACAAGCATTTATAGGCtgatactatatatatacatatatatatacacatatatatata

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG:

id description
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU17454 True 450 lncRNA 0.35 2 23502615 23510082

Neighbor

gene id symbol gene type direction distance location
LOC103034742 grik4,LOC108439963,LOC108277597 coding upstream 2386 23148011 ~ 23500229 (+)
LOC103038567 LOC108436528 coding upstream 888106 22533679 ~ 22614509 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding upstream 973332 22521242 ~ 22529283 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding upstream 1067181 22406379 ~ 22435434 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding upstream 1111614 22352369 ~ 22391001 (+)
cbl cbl coding downstream 46635 23556717 ~ 23638212 (+)
rnf26 rnf26 coding downstream 235102 23745184 ~ 23750130 (+)
LOC103047782 phykpl,LOC108439974,LOC108277665,LOC107743705,LOC107683819,LOC107585546 coding downstream 386410 23896492 ~ 23909676 (+)
bcas3 bcas3,LOC107743646,LOC107664928 coding downstream 439309 23949391 ~ 24473546 (+)
tbx2 tbx2,tbx2b,LOC107685069,LOC107757046 coding downstream 976740 24486822 ~ 24495457 (+)
G12999 NA non-coding upstream 54343 23447993 ~ 23448272 (+)
G12992 NA non-coding upstream 117268 23384132 ~ 23385347 (+)
G12977 NA non-coding upstream 293323 23207892 ~ 23209292 (+)
G12953 NA non-coding upstream 409451 23092744 ~ 23093164 (+)
G12950 NA non-coding upstream 410783 23091632 ~ 23091832 (+)
G13007 NA non-coding downstream 2653 23512735 ~ 23570534 (+)
LOC103032198 NA non-coding downstream 11869 23521951 ~ 23528989 (+)
G13012 NA non-coding downstream 33473 23543555 ~ 23651238 (+)
G13025 NA non-coding downstream 61959 23572041 ~ 23620197 (+)
G13028 NA non-coding downstream 100168 23610250 ~ 23710538 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 984835 22473652 ~ 22517780 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 1117643 22300996 ~ 22384972 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 2038966 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 2512551 20963049 ~ 20990064 (+)
G13067 NA other downstream 343916 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 1190760 24700842 ~ 24722676 (+)
G13237 NA other downstream 1345851 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 1542431 25052513 ~ 25056103 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 1736914 25246996 ~ 25339435 (+)

Expression


Co-expression Network