RNA id: TU17682


Basic Information

Item Value
RNA id TU17682
length 648
lncRNA type intronic
GC content 0.39
exon number 3
gene id G13159
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24345710 ~ 24354970 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatatatatatatatatatatatataaacttatgattgactacatctgttgctttTTTTGAATTCAGAAACACCATGGATACGCCGAGAGATCCAGTGTTCCGTCAAGTTGTGCTACGATGTGAAACCGTGCTACacttttgtgtatatttaaaggtaaaaatataaaataagcaatattagagcatgtttccagtagAAGTAAATGAGATAGAATGAGTTTGAGGCCCCTGATGTAGAGTGAAATCTGTAGAATCTGTAGAGTGAAATTGGCAGAGCTAAATCGGCAGAGTGAAATCGGCTGAGTGAAATCTGTGAAGTAAAATCTGTAGAATGAAATTGGCTGAATAATATCGGCTGAGTAAATTCGTCTGAGCGAAATCTGTAGAGTAAAATTGGCAAATCGAAATCTGTAGAGTGAAATCGGCAGAGTGAAACTGGCAGAGTAAAACTGGCAGAGTGAAACTGGCAGAGTGAAATCTGTAGAGTGAAATCGGCAGAGTGAAATCGGCAGAGTGAAATCGGCAGAGTGAAATCTGTAGAGTGAAATCGGCAGAGTGAAATCGGCAGAGTGAAATCGGCAGAGTGAAATCGGCAGAGTGAAATCTGTAGAGTGAAATTGGCAGAGCTAAATCGGCAGAGTGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17650 lncRNA upstream 86293 24257714 ~ 24259417 (+) True G13142
TU17647 lncRNA upstream 93339 24249739 ~ 24252371 (+) True G13139
TU17632 lncRNA upstream 95769 24199693 ~ 24249941 (+) True G13128
TU17645 lncRNA upstream 99327 24235491 ~ 24246383 (+) True G13138
TU17644 lncRNA upstream 110306 24234982 ~ 24235404 (+) True G13137
TU17692 lncRNA downstream 38329 24393299 ~ 24398652 (+) True G13167
TU17729 lncRNA downstream 292313 24647283 ~ 24687751 (+) True G13197
TU17748 lncRNA downstream 358356 24713326 ~ 24713963 (+) True G13212
TU17750 lncRNA downstream 368868 24723838 ~ 24726166 (+) True G13214
TU18076 lncRNA downstream 677931 25032901 ~ 25033376 (+) True G13455
XM_022675305.1 mRNA upstream 106979 23949391 ~ 24238731 (+) False bcas3
XM_022675324.1 mRNA upstream 436034 23896492 ~ 23909676 (+) True LOC103047782
XM_022675331.1 mRNA upstream 436034 23896545 ~ 23909676 (+) False LOC103047782
XM_007258871.3 mRNA upstream 595580 23745184 ~ 23750130 (+) True rnf26
XM_022675213.1 mRNA upstream 707498 23556718 ~ 23638212 (+) True cbl
XM_007258875.3 mRNA downstream 131852 24486822 ~ 24495457 (+) True tbx2
XM_022675350.1 mRNA downstream 164192 24519162 ~ 24558604 (+) True tbx4
XM_022675359.1 mRNA downstream 345872 24700842 ~ 24722676 (+) True ccdc9
XM_022677946.1 mRNA downstream 383921 24738891 ~ 24776461 (+) True kiaa0753
XM_022675363.1 mRNA downstream 434306 24789276 ~ 24873126 (+) True LOC103028424
TU17542 other upstream 490357 23853998 ~ 23855353 (+) True G13067
TU16886 other upstream 1833074 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 1960738 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 2004197 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 2882061 21459850 ~ 21463649 (+) True G12362
TU17745 other downstream 359381 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 360920 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 500963 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 697543 25052513 ~ 25056103 (+) True G13445
TU18257 other downstream 1313778 25668748 ~ 25673189 (+) False mfrp

Expression Profile