RNA id: TU17632


Basic Information

Item Value
RNA id TU17632
length 971
lncRNA type sense_over
GC content 0.36
exon number 3
gene id G13128
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24199693 ~ 24249941 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaatgtggtgtattacagatcacttgtatcactttgcatcacttatatcaagcccaccttttgaaataagatattgtaaatttgatgaatcaaaccaatgactgaccatagactaatctaaaactggcatatgtctgtctctctgctgtaaaaaaaagaaaaaagaaaatcgagaatcgagtcgaatcgtgaccctaaaatcagaaataaattaGAATCGAGGAtatagagaatcgtgacaccctaGTGCTAATCattaatcccatccggatagagcTTAAGAATGATTTTTACAACAAAGAGCTTGGCAGTGATGTACTTACGATCACCGAAAGAggcaaacaaataataatattgtcccCTTATTAAAACATCAGCCTCCACGCTGGGTGATTGTGCAGCGGAAGAGCACAACACTGTACTGCCGGTGGAATTTTGGGAAAGTTTCAAAGTGAGCAGAGCTGGAATGAAGGACGAGGGGAAAAAAGAGCTCAGCGTAGGCTAGAATAACAGTCTGGCCGAGCTGCTTTACAAACATCTGTATCTAATTACAAACTACATCCTACCAGAGATTCGGAGTAACAAGAACAACGTGGGCCGAGCTGAGAGTTCAGCGCTGATGTCAGGCGCAGGTTCTGCAGCGTCTCGGGGAGCTAGCTGAGATATTTCATTAGCTCTGGACCTGCTGAGCGGCGGAGTGGCTTTCGGGGAGCAGCTCCTCCGTGCCGAACCCCAAACAACAGCATGCTCTATTTGGCCTGCTGTAAATCCTCAGACAGTTGGCCAGCaggtcgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgttggaccGTTCCCTGTAATTCCAACCTGGCACTGTTTCACTGTGGAATTCCTACATGCAATTTAAAGCGATGTTTCAGCTGTCGTAAGACGacaaacagtgtgtgtgatgtgtgtgatgtgtgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17598 lncRNA upstream 54454 24104217 ~ 24145239 (+) True G13111
TU17600 lncRNA upstream 54454 24104217 ~ 24145239 (+) False G13111
TU17593 lncRNA upstream 77381 24041727 ~ 24122312 (+) True G13106
TU17592 lncRNA upstream 180246 24000111 ~ 24019447 (+) True G13105
TU17587 lncRNA upstream 227899 23971247 ~ 23971794 (+) True G13103
TU17650 lncRNA downstream 7773 24257714 ~ 24259417 (+) True G13142
TU17682 lncRNA downstream 95769 24345710 ~ 24354970 (+) False G13159
TU17684 lncRNA downstream 104126 24354067 ~ 24354970 (+) True G13159
TU17692 lncRNA downstream 143358 24393299 ~ 24398652 (+) True G13167
TU17729 lncRNA downstream 397342 24647283 ~ 24687751 (+) True G13197
XM_022675324.1 mRNA upstream 290017 23896492 ~ 23909676 (+) True LOC103047782
XM_022675331.1 mRNA upstream 290017 23896545 ~ 23909676 (+) False LOC103047782
XM_007258871.3 mRNA upstream 449563 23745184 ~ 23750130 (+) True rnf26
XM_022675213.1 mRNA upstream 561481 23556718 ~ 23638212 (+) True cbl
XM_022675217.1 mRNA upstream 562689 23556717 ~ 23637004 (+) False cbl
XM_007258875.3 mRNA downstream 236881 24486822 ~ 24495457 (+) True tbx2
XM_022675350.1 mRNA downstream 269221 24519162 ~ 24558604 (+) True tbx4
XM_022675359.1 mRNA downstream 450901 24700842 ~ 24722676 (+) True ccdc9
XM_022677946.1 mRNA downstream 488950 24738891 ~ 24776461 (+) True kiaa0753
XM_022675363.1 mRNA downstream 539335 24789276 ~ 24873126 (+) True LOC103028424
TU17542 other upstream 344340 23853998 ~ 23855353 (+) True G13067
TU16886 other upstream 1687057 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 1814721 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 1858180 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 2736044 21459850 ~ 21463649 (+) True G12362
TU17745 other downstream 464410 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 465949 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 605992 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 802572 25052513 ~ 25056103 (+) True G13445
TU18257 other downstream 1418807 25668748 ~ 25673189 (+) False mfrp

Expression Profile