RNA id: TU17598


Basic Information

Item Value
RNA id TU17598
length 318
lncRNA type sense_over
GC content 0.44
exon number 3
gene id G13111
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24104217 ~ 24145239 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctccaggaccagtgtatattttggaggcttttttttcaataagttttcaataaatttttataaatcaaatcgttttgaatcaaaaatcgattttgaatcgaatcgtggcccccaaaatcggaatcgaatcgaatcgtgagatagtaaaagattcccacccctaatgattacaggacaaagaatcaggcaaaacattacacatagaaaatacagaatacagaacccccagtgaaaaactccctcagagctgcaggaggaggaagaaaccttgggaggaccaagactcacattaaaggggggaccatcctaccactgatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17592 lncRNA upstream 84770 24000111 ~ 24019447 (+) True G13105
TU17587 lncRNA upstream 132423 23971247 ~ 23971794 (+) True G13103
TU17544 lncRNA upstream 246301 23857602 ~ 23857916 (+) True G13069
TU17543 lncRNA upstream 246857 23856991 ~ 23857360 (+) True G13068
TU17540 lncRNA upstream 260942 23840288 ~ 23843275 (+) True G13065
TU17622 lncRNA downstream 32827 24178066 ~ 24215946 (+) True G13122
TU17632 lncRNA downstream 54454 24199693 ~ 24249941 (+) True G13128
TU17644 lncRNA downstream 89743 24234982 ~ 24235404 (+) True G13137
TU17645 lncRNA downstream 90252 24235491 ~ 24246383 (+) True G13138
TU17647 lncRNA downstream 104500 24249739 ~ 24252371 (+) True G13139
XM_022675324.1 mRNA upstream 194541 23896492 ~ 23909676 (+) True LOC103047782
XM_022675331.1 mRNA upstream 194541 23896545 ~ 23909676 (+) False LOC103047782
XM_007258871.3 mRNA upstream 354087 23745184 ~ 23750130 (+) True rnf26
XM_022675213.1 mRNA upstream 466005 23556718 ~ 23638212 (+) True cbl
XM_022675217.1 mRNA upstream 467213 23556717 ~ 23637004 (+) False cbl
XM_007258875.3 mRNA downstream 341583 24486822 ~ 24495457 (+) True tbx2
XM_022675350.1 mRNA downstream 373923 24519162 ~ 24558604 (+) True tbx4
XM_022675359.1 mRNA downstream 555603 24700842 ~ 24722676 (+) True ccdc9
XM_022677946.1 mRNA downstream 593652 24738891 ~ 24776461 (+) True kiaa0753
XM_022675363.1 mRNA downstream 644037 24789276 ~ 24873126 (+) True LOC103028424
TU17542 other upstream 248864 23853998 ~ 23855353 (+) True G13067
TU16886 other upstream 1591581 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 1719245 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 1762704 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 2640568 21459850 ~ 21463649 (+) True G12362
TU17745 other downstream 569112 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 570651 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 710694 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 907274 25052513 ~ 25056103 (+) True G13445
TU18257 other downstream 1523509 25668748 ~ 25673189 (+) False mfrp

Expression Profile