G13122


Basic Information

Item Value
gene id G13122
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24178066 ~ 24215946 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17622
gaggagctactgaacgccgtgatgtcatgtgaccaagaaaaaaggctaaaaacgtactggtcctcctgtttttacaattgcGGTCCGGATGCAGGAGGGCTTTACAGTCtctttcactccctctcttattctctttctttctttatttctctctctcttttattctttctctccctccctctgttcttgttgtgtgtgtaatgtctgaGCCCCATCATGGCCGGCTCTGTCGCCCCGGCTCCTCTacagatgtaaacacacacagagcaccACTAATTCTTTTATTTTGGCATCTCACGCTCAAATTGACTCACTTTTAACCCTCAGGCATTTTAATGTGGTCTGAAGGGAAACCTGAGAAGCTCCTGACGCTCCCGTCgctcagtaaaacagtaaaacagggTCTGTGGAGGTATTTgaagtctgtctctctcctcccAGCGGTGAGACATTAACCGTAATGAAGTTTTCTCCCTCGTCTCAGTGCTGAAGCGTCTCCTGGTGTCTCCTCCAGAGCTGGGAGGGAGAGCAGAGTTAAATTGGGAGGAATTCCTCCTGAGTCAGTTCCCACCCAGGGCTCAGACTTGGCCTTAACCCGGGCTGCTCGTGTTCATtggcttttttatgttttttccccCCACGCTCAATAAAGCCTGAGTCTGTACGGTTATAGCCGGTCACCACTGTGATCCGTCTGCACGGGGGAGTTTCAGCGTCTCAGACTTTCACCCAGTAAAGCttttaacagtaacagtaaagcTGTAGCTCCGACCCGTACAGATCTTATTCAATTACTTAGTATCAGCCGATATTAAGGTTTGCATTAATAACATTagtttgcattaaaaaaaacattgaaataaaaaattaaaaaaagtaataagaaatgaacaaaaatacattatagttttaaaattaaaataaggaaaaaagataatctaataaaaacatgattagaaactaaaagtcaactcacacacacacacacacacacacacacacactaaacactagcGCTGCAGTGTTTGCGTGTCTGGCGCCCGGTGTTTAATTCCTCTCTACAGGGCCGGCGAGTGGCGGGGGTGAGGAGTGTCAGTCgtggggagtgtagtggagCGGCTGTGAGTGGGAGTGATCCAGTGTCATGGCAGGCTGCTAGTGGCTGCCCGTCACTGCTGAGTGGCTGGGAGCGATGCCCCCTGCGCCAGCCTGTCAGCTGCCAGTTCCACACGGTGACGGGAGCGCTCCTCACCCGGACTGACACTGAAATTATGCTTCTCAGATCAACAGCTCTGCTGTGTTCTCCCAGAAATCTTTAATATTTCAtaccataaaaaacacacaactccAAATCAGGACATCAAGTTACAGTGAACAAATGAATATACAACAAATTACAATACTACTGTTCTCAAATATACACTGATACTGATGAGAAACGTACTAAAACTGCTACTCTTCTGTACTTCTGTGATCTAGGCTACTACAATTCCTCAGGGATTCAAGGGTTTAaagattcaaggagattttattgacATGTGGTACAATGAAATTgtgaaattgtgatctcacaatgcagtttacacccaggagctgtTGTTacatatagataaatatagataaaataagaacacaataaaatagaatagaacaaaatagatgcacaaaatacacaaaaaataaaataaatagggaAAGTATGCAGGGCAGCAACATGAGGTCCAGATTGCAATTTTTGCTGTAGCAGCATGATAGTGTGAATTAAGAGCAGTACAAAAGTACTAGATaaagtgcagtgtgtttgtttaggtggagtttaagagtcttacagcttctggaatgaagctgttcctcagtctggttgttttgcacttgatgctccgcgGCCTAAATTGGAACTgaaattatattactataaactacaaactcTAATCAAATATAGTTCcataagtatataaatattacagatttaatgtactgtttttaggcctgtcacaagaATTGCATTATTGATGTACCGTATTATTAATCGATAGATGGACACAACTTCACTTCTTTGGACTGACCTCCATTATaactattgttttttattagggATGCATCGAAATGTACCTTttgtatgctgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17622 True 2201 lncRNA 0.38 3 24178066 24215946

Neighbor

gene id symbol gene type direction distance location
LOC103047782 phykpl,LOC108439974,LOC108277665,LOC107743705,LOC107683819,LOC107585546 coding upstream 268390 23896492 ~ 23909676 (+)
rnf26 rnf26 coding upstream 427936 23745184 ~ 23750130 (+)
cbl cbl coding upstream 539854 23556717 ~ 23638212 (+)
LOC103034742 grik4,LOC108439963,LOC108277597 coding upstream 677837 23148011 ~ 23500229 (+)
LOC103038567 LOC108436528 coding upstream 1563557 22533679 ~ 22614509 (+)
tbx2 tbx2,tbx2b,LOC107685069,LOC107757046 coding downstream 270876 24486822 ~ 24495457 (+)
tbx4 tbx4 coding downstream 303216 24519162 ~ 24558604 (+)
kiaa0753 NA coding downstream 522945 24738891 ~ 24776461 (+)
LOC103028424 LOC108425893 coding downstream 573330 24789276 ~ 24873126 (+)
LOC103027752 NA coding downstream 764249 24980195 ~ 24982031 (+)
G13111 NA non-coding upstream 32827 24104217 ~ 24145239 (+)
G13106 NA non-coding upstream 55754 24041727 ~ 24122312 (+)
G13105 NA non-coding upstream 158619 24000111 ~ 24019447 (+)
G13103 NA non-coding upstream 206272 23971247 ~ 23971794 (+)
G13069 NA non-coding upstream 320150 23857602 ~ 23857916 (+)
G13137 NA non-coding downstream 19036 24234982 ~ 24235404 (+)
G13138 NA non-coding downstream 19545 24235491 ~ 24246383 (+)
G13139 NA non-coding downstream 33793 24249739 ~ 24252371 (+)
G13142 NA non-coding downstream 41768 24257714 ~ 24259417 (+)
G13159 NA non-coding downstream 129764 24345710 ~ 24354970 (+)
G13067 NA other upstream 322713 23853998 ~ 23855353 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 1660286 22473652 ~ 22517780 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 1793094 22300996 ~ 22384972 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 2714417 21459850 ~ 21463649 (+)
trnan-guu NA other upstream 3201789 20976204 ~ 20976277 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 484896 24700842 ~ 24722676 (+)
G13237 NA other downstream 639987 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 836567 25052513 ~ 25056103 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 1031050 25246996 ~ 25339435 (+)
LOC103045399 LOC108426937,LOC108277812 other downstream 1345687 25561633 ~ 25642743 (+)

Expression


Co-expression Network