G13111


Basic Information

Item Value
gene id G13111
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24104217 ~ 24145239 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17598
ctccaggaccagtgtatattttggaggcttttttttcaataagttttcaataaatttttataaatcaaatcgttttgaatcaaaaatcgattttgaatcgaatcgtggcccccaaaatcggaatcgaatcgaatcgtgagatagtaaaagattcccacccctaatgattacaggacaaagaatcaggcaaaacattacacatagaaaatacagaatacagaacccccagtgaaaaactccctcagagctgcaggaggaggaagaaaccttgggaggaccaagactcacattaaaggggggaccatcctaccactgatc
>TU17600
ctccaggaccagtgtatattttggaggcttttttttcaataagttttcaataaatttttataaatcaaatcgttttgaatcaaaaatcgattttgaatcgaatcgtggcccccaaaatcggaatcgaatcgaatcgtgagatagtaaaagattcccacccctaatgattacaggacaaagaatcaggcaaaacattacacatagaaaatacagaatacagaacccccagtgaaaaactccctcagagctgcaggaggaggaagaaaccttgggaggaccaagactcacattaaaggggggaccatcctaccactgatc

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: telomerase protein component 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17598 True 318 lncRNA 0.44 3 24104217 24145239
TU17600 False 318 lncRNA 0.37 2 24104217 24145239

Neighbor

gene id symbol gene type direction distance location
LOC103047782 phykpl,LOC108439974,LOC108277665,LOC107743705,LOC107683819,LOC107585546 coding upstream 194541 23896492 ~ 23909676 (+)
rnf26 rnf26 coding upstream 354087 23745184 ~ 23750130 (+)
cbl cbl coding upstream 466005 23556717 ~ 23638212 (+)
LOC103034742 grik4,LOC108439963,LOC108277597 coding upstream 603988 23148011 ~ 23500229 (+)
LOC103038567 LOC108436528 coding upstream 1489708 22533679 ~ 22614509 (+)
tbx2 tbx2,tbx2b,LOC107685069,LOC107757046 coding downstream 341583 24486822 ~ 24495457 (+)
tbx4 tbx4 coding downstream 373923 24519162 ~ 24558604 (+)
kiaa0753 NA coding downstream 593652 24738891 ~ 24776461 (+)
LOC103028424 LOC108425893 coding downstream 644037 24789276 ~ 24873126 (+)
LOC103027752 NA coding downstream 834956 24980195 ~ 24982031 (+)
G13105 NA non-coding upstream 84770 24000111 ~ 24019447 (+)
G13103 NA non-coding upstream 132423 23971247 ~ 23971794 (+)
G13069 NA non-coding upstream 246301 23857602 ~ 23857916 (+)
G13068 NA non-coding upstream 246857 23856991 ~ 23857360 (+)
G13065 NA non-coding upstream 260942 23840288 ~ 23843275 (+)
G13122 NA non-coding downstream 32827 24178066 ~ 24215946 (+)
G13128 NA non-coding downstream 54454 24199693 ~ 24249941 (+)
G13137 NA non-coding downstream 89743 24234982 ~ 24235404 (+)
G13138 NA non-coding downstream 90252 24235491 ~ 24246383 (+)
G13139 NA non-coding downstream 104500 24249739 ~ 24252371 (+)
G13067 NA other upstream 248864 23853998 ~ 23855353 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 1586437 22473652 ~ 22517780 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 1719245 22300996 ~ 22384972 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 2640568 21459850 ~ 21463649 (+)
trnan-guu NA other upstream 3127940 20976204 ~ 20976277 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 555603 24700842 ~ 24722676 (+)
G13237 NA other downstream 710694 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 907274 25052513 ~ 25056103 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 1101757 25246996 ~ 25339435 (+)
LOC103045399 LOC108426937,LOC108277812 other downstream 1416394 25561633 ~ 25642743 (+)

Expression


Co-expression Network