RNA id: TU17644


Basic Information

Item Value
RNA id TU17644
length 292
lncRNA type intronic
GC content 0.37
exon number 2
gene id G13137
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24234982 ~ 24235404 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgatggatgaatggatggttgGAAGCAGGGAcagttggatggatgaatggatagttggatggatggatgatgggtgGATAGTTGGAGAGACAGTTGGATGGAgagttggatggatgaatgtatggaggatcagttggatggatggatggatggatggatggtcagttggatggatgaattgaaGGGTCAGTTAAATGGAGAGTTGGGTGGTTTAATttaatggatgaatgaatgaagggaCAGTGGAATGGACATGTGGATGACAGGAGAgttggatggattgatggatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17622 lncRNA upstream 19036 24178066 ~ 24215946 (+) True G13122
TU17598 lncRNA upstream 89743 24104217 ~ 24145239 (+) True G13111
TU17600 lncRNA upstream 89743 24104217 ~ 24145239 (+) False G13111
TU17593 lncRNA upstream 112670 24041727 ~ 24122312 (+) True G13106
TU17592 lncRNA upstream 215535 24000111 ~ 24019447 (+) True G13105
TU17645 lncRNA downstream 87 24235491 ~ 24246383 (+) True G13138
TU17647 lncRNA downstream 14335 24249739 ~ 24252371 (+) True G13139
TU17650 lncRNA downstream 22310 24257714 ~ 24259417 (+) True G13142
TU17682 lncRNA downstream 110306 24345710 ~ 24354970 (+) False G13159
TU17684 lncRNA downstream 118663 24354067 ~ 24354970 (+) True G13159
XM_022675324.1 mRNA upstream 325306 23896492 ~ 23909676 (+) True LOC103047782
XM_022675331.1 mRNA upstream 325306 23896545 ~ 23909676 (+) False LOC103047782
XM_007258871.3 mRNA upstream 484852 23745184 ~ 23750130 (+) True rnf26
XM_022675213.1 mRNA upstream 596770 23556718 ~ 23638212 (+) True cbl
XM_022675217.1 mRNA upstream 597978 23556717 ~ 23637004 (+) False cbl
XM_007258875.3 mRNA downstream 251418 24486822 ~ 24495457 (+) True tbx2
XM_022675350.1 mRNA downstream 283758 24519162 ~ 24558604 (+) True tbx4
XM_022675359.1 mRNA downstream 465438 24700842 ~ 24722676 (+) True ccdc9
XM_022677946.1 mRNA downstream 503487 24738891 ~ 24776461 (+) True kiaa0753
XM_022675363.1 mRNA downstream 553872 24789276 ~ 24873126 (+) True LOC103028424
TU17542 other upstream 379629 23853998 ~ 23855353 (+) True G13067
TU16886 other upstream 1722346 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 1850010 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 1893469 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 2771333 21459850 ~ 21463649 (+) True G12362
TU17745 other downstream 478947 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 480486 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 620529 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 817109 25052513 ~ 25056103 (+) True G13445
TU18257 other downstream 1433344 25668748 ~ 25673189 (+) False mfrp

Expression Profile