RNA id: TU17650


Basic Information

Item Value
RNA id TU17650
length 1625
lncRNA type intronic
GC content 0.43
exon number 2
gene id G13142
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24257714 ~ 24259417 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGCCATTACAGACTCATTACTGCAGGAAATTGAAAACACTGACCCCCCCTGTCCCTCGTCCCCCTCCTCCCCTCCGTCCCCCCCGCGCGCCGACGCCATTTGTAGTCCCTAATTGAGCTGTAATTAAGATGAACCCAGAGGAGGAAGATGGAGCGAGAGCCCGAGGCGAGAGGAAGGTCAGGAAGAGCGAGAGGAAACCAATCAGCACATCATCTCACACGCAACCACACAATCCACACTCTTACACTGTGGAGACGAGTGGGCGGGGCCGGATACGGGCTTATTTTTATCCTTTCAGTCACGTACACTTacattaatgattatttttttatgattttgctTTGATTTTATGATCTTTAGAGAAATATATTGTACTGTTTTGTGACTGTTACTAGTTCAGTTcacttcataataataataataataataataataataataataatacattttatttatatagcgcttttcaaAATTCGCAAAGACgctttacatacaaaaatacggcacaaattaaaagaaataaaaaaaaatacaacaacaataataagggACCGTCTTTAAATTGAACACAACAATACTAATCTAGGCAGTTTTACCAatgacaatttacaatttatatataattaaaaaaaaaaaacttcagttcagtttttgCTTTATTGGCATCACAAAATGACATTTGTATTGTCAAAAAATTTGAGACAAGCAGTACAGACACAGAGTAATAGGTACAACAACATACACatatagaagtgtgtgtgtgtgtatatatatatatatataatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaaaaaaaaacaattaaaaattataggagtgtgtaataatgatatataaatTGCAAAAAGATAAGAGAGAAATGAGTCATATTTCTGATAAGGATTCCAGATGAGACAATCAGTAGTTTGTGATTGGAGATcgatttttaagtgattgacaccactaatatgaatataattgaattttgccaatctaatgctgatattctTCTAAAAAGAACTCCTAAAAACCGAAATGCATTTAGTAATATGCTTcaagtaaaacattattatagttccaacaagatccaaaagtatGATAGTCTCCCATGTTGTGAGAAGGTGGAAGTGAAAATTCATAAGGTGGAAAATGCTATTGCTATCTTGTTTGCTAAACatgatataaattatataaatatattaattactatttactttactatttactatcttgtttaactactctagcagacTATTGGATCAAATACATTTaacttaccatatttttcacattataagaagcacttacaattttaaaatcaggactttatatcatattgtatcatacgcaataatatcagcAAGATTTTTGATTATGTtgaacgatattatatcctgaaatatcaaTACcgtaccatatcacccacccctaattatcacatcagggttctacttttttactgtttttatcaaaagaaaaaatcacactgttctcatttcccattatatatctactagagacagattatatctgtccagtatcatttattttactttaatcctggatatatggagatatttggagtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17647 lncRNA upstream 5343 24249739 ~ 24252371 (+) True G13139
TU17632 lncRNA upstream 7773 24199693 ~ 24249941 (+) True G13128
TU17645 lncRNA upstream 11331 24235491 ~ 24246383 (+) True G13138
TU17644 lncRNA upstream 22310 24234982 ~ 24235404 (+) True G13137
TU17622 lncRNA upstream 41768 24178066 ~ 24215946 (+) True G13122
TU17682 lncRNA downstream 86293 24345710 ~ 24354970 (+) False G13159
TU17684 lncRNA downstream 94650 24354067 ~ 24354970 (+) True G13159
TU17692 lncRNA downstream 133882 24393299 ~ 24398652 (+) True G13167
TU17729 lncRNA downstream 387866 24647283 ~ 24687751 (+) True G13197
TU17748 lncRNA downstream 453909 24713326 ~ 24713963 (+) True G13212
XM_022675305.1 mRNA upstream 18983 23949391 ~ 24238731 (+) False bcas3
XM_022675324.1 mRNA upstream 348038 23896492 ~ 23909676 (+) True LOC103047782
XM_022675331.1 mRNA upstream 348038 23896545 ~ 23909676 (+) False LOC103047782
XM_007258871.3 mRNA upstream 507584 23745184 ~ 23750130 (+) True rnf26
XM_022675213.1 mRNA upstream 619502 23556718 ~ 23638212 (+) True cbl
XM_007258875.3 mRNA downstream 227405 24486822 ~ 24495457 (+) True tbx2
XM_022675350.1 mRNA downstream 259745 24519162 ~ 24558604 (+) True tbx4
XM_022675359.1 mRNA downstream 441425 24700842 ~ 24722676 (+) True ccdc9
XM_022677946.1 mRNA downstream 479474 24738891 ~ 24776461 (+) True kiaa0753
XM_022675363.1 mRNA downstream 529859 24789276 ~ 24873126 (+) True LOC103028424
TU17542 other upstream 402361 23853998 ~ 23855353 (+) True G13067
TU16886 other upstream 1745078 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 1872742 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 1916201 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 2794065 21459850 ~ 21463649 (+) True G12362
TU17745 other downstream 454934 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 456473 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 596516 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 793096 25052513 ~ 25056103 (+) True G13445
TU18257 other downstream 1409331 25668748 ~ 25673189 (+) False mfrp

Expression Profile