RNA id: XM_022675350.1


Basic Information

Item Value
RNA id XM_022675350.1
length 1945
RNA type mRNA
GC content 0.57
exon number 9
gene id tbx4
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24519162 ~ 24558604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGATGCTGAGCTGCGGGCTGAGCGCCGCGTAACGCTGGGATAACCCGCCCGCCGCACCGCACCGCGCGCGCCGCAAAGCGCCGAGGACCCGGATATGGAGGGACTGAGCCCATAGTCGGTCCATCAGCCGAGaGATGCTCCAGGAGAAGGCCTCAGCTGTGGCTGATGACGGCGTGACTGTGGCCCAGTCTGGTGGGCTTCCAGAACTTGCTGCTGATTCCTCACACCTGGGTTTACCTGAGACTCCCAGCATCCCCCACAATAATGAAGTCGACCAGAACATTGAGAACATTAAAGTTCTTCTTCATGAGCGTGAACTGTGGAAGAAGTTCCACGAGGCGGGAACTGAGATGATCATCACTAAAGCAGGCAGGCGGATGTTTCCCAGCTATAAGGTGAAAGTCACAGGGATGAACCCAAAAACCAAATATATCCTATTAATAGACATTGTTCCAGCTGATGATCATCGGTACAAGTTCTGCGACAATAAGTGGATGGTGGCTGGTAAAGCAGAGCCTGCCATGCCCGGGCGTCTCTACGTTCACCCCGACTCTCCGGCTACAGGAGCTCACTGGATGAGACAATTAGTCTCCTTTCAGAAGCTGAAGCTCACCAACAACCACCTGGACCCTTTTGGACACATCATCCTGAACTCTATGCACAAATATCAGCCCCGGCTGCACATCGTAAAAGCAGACGAGAACAACGCCTTCGGCTCTAAGAACACAGCTTACTGCACTCACGTGTTCCACGAAACCACGTTTATCTCTGTGACGTCCTACCAGAACCATAAGATAACACAGTTAAAGATTGAGAACAATCCGTTTGCCAAAGGTTTTCGTGGAAGTGATGAGGGAGACCTGCGTGTATCCAGGCTGCAAGGGAAAGATTACCCAGTGATCTCTAAGAACATGGTCCGGCAGCGGCTCATCTCCTCACACCCTCACCTGTCCGGGAAGTTGAGTTCAGGTGTTCTGACTGGTCACCCACAGGTCCACTCCCACTACCAGTACGAGACTGGAGTCCCGCTGCCCAGTTCAGACCCACAGGAGCCCCTGACCAGCCCGTTCACTTCCAGCAGAGAATCCAGTCTGATTTACCACTGCTTCAAACACAGAGATAACTCCCGGCACTTGGAGCTGGGCTGTAAGCGGCCGTATCTTGATGGAGCTCCGTCGGCCGTTCCTGAGGAGCACTACTTCCGCTCGCCTCCGTCATACGAGCCTCCGTTACTGAGCCACTCCTACTGCGGCGGCGGCGAGGCGCTGAGCTCCAGAGACGCCTGCATGTACGGGGGTATGGAGGTGGAGGCGGGTGCCGGGGGGGCGGTGGGTTCTGAGGAACTTCCTCCACCCTCGCTGAACTGCAACATGTGGGCGTCGGTGCAGCCGTACCCTCGCTACGGCGTGCAGACTGTGGAGGCTGTGCCCTACCAGCCCTTTACCGCCCACTTCTCCAGCACCGCCACCGCCGCCACCGCCGTGGTGCCGCACCACTCGCCGACCGTGCAGCATCCTCAACCGGCTCCTCCCCTTCCTGAGCTCATGTCCTTCACCGCACAGCGAGCTCTACCACCACCGgctccttcctcctcctcatcatcatcatcctcacccTCCGGCCCCGGGTCCCGCGACAGAACCGCCCACCCGCCTCTGTACCACAGGAAACCCGCCGGCTCTCCTCTGAGACCCCACAGAGATTACTCAGCCTACCCCTGCCAAAGCCCCACCCCCAGAGACCCCGTCTACCAGTACCACCAGATGGGTCTCAGCAGCATAGGAGCCCCCCCGCACTGGACTGatagctaaagctaagctaaagctagGGGGAGATTAGATTAGAGGTGTGTGAAACGGTCAGGTGTCAGGTGATGAGGTTTACctgttacactgtaaacccgGATACGCTGAATTTacttcaaaaaaaagaaagaaggagttt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10178 TBX4; T-box protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17692 lncRNA upstream 120510 24393299 ~ 24398652 (+) True G13167
TU17682 lncRNA upstream 164192 24345710 ~ 24354970 (+) False G13159
TU17684 lncRNA upstream 164192 24354067 ~ 24354970 (+) True G13159
TU17650 lncRNA upstream 259745 24257714 ~ 24259417 (+) True G13142
TU17647 lncRNA upstream 266791 24249739 ~ 24252371 (+) True G13139
TU17729 lncRNA downstream 88679 24647283 ~ 24687751 (+) True G13197
TU17748 lncRNA downstream 154722 24713326 ~ 24713963 (+) True G13212
TU17750 lncRNA downstream 165234 24723838 ~ 24726166 (+) True G13214
TU18076 lncRNA downstream 474297 25032901 ~ 25033376 (+) True G13455
TU18079 lncRNA downstream 488734 25047338 ~ 25049073 (+) True G13458
XM_007258875.3 mRNA upstream 23705 24486822 ~ 24495457 (+) True tbx2
XM_022675283.1 mRNA upstream 45616 23949391 ~ 24473546 (+) True bcas3
XM_022675286.1 mRNA upstream 45616 23949391 ~ 24473546 (+) False bcas3
XM_022675293.1 mRNA upstream 45616 23949391 ~ 24473546 (+) False bcas3
XM_022675301.1 mRNA upstream 45616 23949391 ~ 24473546 (+) False bcas3
XM_022675359.1 mRNA downstream 142238 24700842 ~ 24722676 (+) True ccdc9
XM_022677946.1 mRNA downstream 180287 24738891 ~ 24776461 (+) True kiaa0753
XM_022675363.1 mRNA downstream 230672 24789276 ~ 24873126 (+) True LOC103028424
XM_007236783.3 mRNA downstream 421591 24980195 ~ 24982031 (+) True LOC103027752
XM_015602313.2 mRNA downstream 513698 25072302 ~ 25086749 (+) False lipt2
TU17542 other upstream 663809 23853998 ~ 23855353 (+) True G13067
TU16886 other upstream 2006526 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 2134190 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 2177649 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 3055513 21459850 ~ 21463649 (+) True G12362
TU17745 other downstream 155747 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 157286 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 297329 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 493909 25052513 ~ 25056103 (+) True G13445
TU18257 other downstream 1110144 25668748 ~ 25673189 (+) False mfrp

Expression Profile