RNA id: XM_022675301.1


Basic Information

Item Value
RNA id XM_022675301.1
length 3555
RNA type mRNA
GC content 0.51
exon number 24
gene id bcas3
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23949391 ~ 24473546 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCCGCTGTACGTAGCCTGCGCGGTGTTGTTGTCGCGTTTTGGGAAGATCTGTGTTTATAGAGCTGAATTGAGGCGCAGCGCTGCAGGATACTGACTGATTAATCATGGCGTCTGACTCCCCACGCAGACCAAGCCGCTGTGCTGGAGGGGTCGTAGTTCGAGCTCAGGCTGCAACgGAACAGTCTTACATGGAAAGTGTTGTGACATTTCTGCAAGATGTGGTTCCTCAGgcATATACAGGTGCACCTCCAACAGATGAGAAGGAAAAGATCATATGGGTTCGGTTTGAAAAGGCAGACATCAACGaTGTGGCGCGCTCCCCAGAGTTCCTGGAGATGCACGGCAGTGGTGTTGACCCACCTCTGTGTCTGATGATTGGCTACACAGATGGAATGCAGATTTGGAGCATATCGTTGAGTGGAGAAGCTCAGGAGCTGTTCTCAGTGAGACACGGTCCTGTAAGAGCTGCTCGGATCCTCCCAGCACCTCATATCTGTCCCCTGAAGACAGACAGCTTTGCAGAGAAGAGACCCCTCCTTGGTGTGTGCAAGAGCTCGGGCTCCTCAGGGACGAGTCCCCCATATTGCTGTGTGGACCTGTATTCTCTAAGGACTGGAGAGATGGTCAAGtcaattcagtttaaaacaccCATTTATGACCTGCACTGCAACAAAAGGATTCTTGTGGTCAGTCTTCAGGAGAAGATAGCTGCGTTCGATAGCTGCACTTTCACGAAAAAGTTCTTTGTCACAAGCTGCTACCCGTGTCCTGGTCCTAACTTTAACCCTGTAGCTCTCGGGGGTCGATGGTTGGCCTACGCAGAGAATAAGCTGATCCGGTGTCATCAGTCCCGTGGTGGTGCATGTGGAGATAATGCCCAGTCCTACACTGCCACCGTCATCAGTGCTGCCAAAACGCTGAAGACTGGATTAACTATGGTGGGGAAGGTGGTGACGCACCTCGCGGGTACTTTACCCTCCGGAGTGCCCGACGAGGAGAGCACTGCCCACAGCACCACCCGCCGCAGCCCTCACCAACCCGGCGTCATCACCatcatagacacacacacagtcggAGAAGGacaggtaCTTGTGAGTGAAGACTCTGATGGGGAAGGTGTGGTCGCTCATTTTCCAGCTCATGATAAACCGATATCCTGCATGGCGTTTAACCCCAGTGGTATGTTGTTGGTGACCGCTGATGCACTAGGACACGATTTCCATGTATTTCAAGTCCTGACTCACCCGTGGGCCTCTTCCCAGAGTGCAGTTCATCACCTGTACACCCTGCACAGAGGAGAAACTGAGGCTAAGGTGCAGGACATCTGCTTCAGTCAGGActgccgctgggtggtggtcaGCACCCTGCGCGGTACCTCACACGTTTTCCCCATCAACCCGTACGGCGGCGCCCCGTGCGCCCGCACTCATCTGTCTCCCCGCGTGGTAAACCGCGTGAGCCGCTTCCAGAAGAGCGCCGGCCTGGAGGAGATCGAGCAGGAGCTCAGCAGCAAGCAGGGTGGCCGCTGTAGCCCCATCCCCGGGCTCTCCAGCAGCCCCTCCGGCTCTCCTTTACACGCTAAACTGACCAATCAAGAGTCGTACAATAATTTCACCAACAACAACATGGGGAATCCGCGTCTCTCTCCTCTGCCCAGCCTGACTGTGGTTCTGCCGCTGGCTCAGATCAAGCAGCCCATGACCCTGGGCACCATCACCAAACGCACAGGTAAAGCCAAGCCTCCTCCTCAGATCTCTCCCAGTAAGTCGAGTGGGGGGGAGTTCTGTGTAGCGGCGGTCTTCGCCTCGTCTCGCTCCTGGTTCATCACCAACCCCAacatgaagagagagaaagATCAGTCTCGTCAGGCCGTTGTTGACTCTCTCTACATCGTGAGCTGTTATGGTAATCTGGTGGAACATGTGCTGGAGCCTCGGCCAATAAGCACAGCGCAGAAGATCGGGGACGACACGCCGTTGGAGCTGAACACGTCTCCGAGAGCATGCTGGAATTTAGCCAGAACGCCACAGTGGAACGAGCTGCAGCCTCCTTTTAACAGCAGCCACCCCTTGGTTCTGGCGTCAGACTTGGTGCAGTACTATCAATACCTCCTGGCTGGCTTGATGCCTCCAGGAAGCCCTGGGCCAATCACCAGACACGAATCCTACGACAGCCTATCCTCCGACCACAGTGGCCAGGAGGACGAGGAGTGGCTCTCTCAGgtgGAGATCGTGACCCACACTGGTCCTCACAGACGGCTGTGGATGGGCCCACAGTTCCAGTTTAAGACCATCCACCCCTCAGGCCAGACCACGGTCATCTCCTCCAGTTCATCTGTGCTGCAGTCTCAGGGTCCCAGTGATACCCAGCAGCCCCTGCTGGACTTCGACACGGACGACCTGGACCTGCACAGCCTCAGGATCCAGCCGGTGCGCTCTGAGCCGGTGAGCATGCCCGGTTCCTCTCGGCTGGTGGCCGAACGCAGAGGCCAGGCTACAGTTATTGATACCGGCTCAGgcacGTTCGACCGCAGCGTGACCCTGCTGGAGGTGTGCGGCAGCTGGCCGGAGAGCTTCGGTCTGCGTCACATGTCCTCTGTGGACACAACGGAGGAGGGCCTGAGGGAGAGACTGGCTGAAGCCATGTCCGAATCACCCAGCAGAGACATCGTGGGCTCCGGAACAGAGCTGCAGAGGGAGGGGAGTATAGAGACGCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATTCCTCGCAACTTCGAAGGCTACCGGTCTCCTCTTCCCACCAACGAGAGCCAGCCGCTCAGCCTGTACCCCACCGCCTTCCCCTGAACACTGTCCCTCAACACAACCAGCCCTGTAGTGATAAAGAGTGAAAATCCTTCCAAATCCAGCGTGAAAAAGGACGAGAGTGATCTGCAGGTGTTCACTATTAAAAAGGAGTGACTGGATTCAGATCTGTTTACCCAATATaaatgtgattattgtgatttaaagagagagagaaagagtttaGAAGTGAAAGATCGAATTTAAAAAGCTGTCAGACCTGTaatttttcactttctctctctttttattgtttgaacatgtttaatattagtTTATTGTTATCATTTCTTTCAAACTAAATCTTCAAAATCTTCAAAATCTTTAAATTCTACAAGTTCTTCAGTCTTCATGTTGatgtctatatatgtgtgttgggtaccactttaaaagcAGACtttaagactacctttataaagggtttatgaatggtttataaaggagtttactttttagtttagttaagaattaggttgcaaatactttaaaaccctTTATTAAGCAGTTAATAATCATATAACATCACAtaggaaatagaaatagaaatcgCAACAGTTGAAAGGTGAAAATTTGCTAAATATTAACTCCACACTCATTTATACTGATTAAACCTGTCATTAATTTATGTGTAAGTATGGTTAACTAcagtatttactataaattaaattactttgttgaattaaatgactaagcaaacaacagatcactgttttttatcttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17544 lncRNA upstream 91475 23857602 ~ 23857916 (+) True G13069
TU17543 lncRNA upstream 92031 23856991 ~ 23857360 (+) True G13068
TU17540 lncRNA upstream 106116 23840288 ~ 23843275 (+) True G13065
TU17522 lncRNA upstream 179779 23766485 ~ 23769612 (+) True G13051
TU17512 lncRNA upstream 224957 23710556 ~ 23724434 (+) True G13043
TU17729 lncRNA downstream 173737 24647283 ~ 24687751 (+) True G13197
TU17748 lncRNA downstream 239780 24713326 ~ 24713963 (+) True G13212
TU17750 lncRNA downstream 250292 24723838 ~ 24726166 (+) True G13214
TU18076 lncRNA downstream 559355 25032901 ~ 25033376 (+) True G13455
TU18079 lncRNA downstream 573792 25047338 ~ 25049073 (+) True G13458
XM_022675324.1 mRNA upstream 39715 23896492 ~ 23909676 (+) True LOC103047782
XM_022675331.1 mRNA upstream 39715 23896545 ~ 23909676 (+) False LOC103047782
XM_007258871.3 mRNA upstream 199261 23745184 ~ 23750130 (+) True rnf26
XM_022675213.1 mRNA upstream 311179 23556718 ~ 23638212 (+) True cbl
XM_022675217.1 mRNA upstream 312387 23556717 ~ 23637004 (+) False cbl
XM_007258875.3 mRNA downstream 13276 24486822 ~ 24495457 (+) True tbx2
XM_022675350.1 mRNA downstream 45616 24519162 ~ 24558604 (+) True tbx4
XM_022675359.1 mRNA downstream 227296 24700842 ~ 24722676 (+) True ccdc9
XM_022677946.1 mRNA downstream 265345 24738891 ~ 24776461 (+) True kiaa0753
XM_022675363.1 mRNA downstream 315730 24789276 ~ 24873126 (+) True LOC103028424
TU17542 other upstream 94038 23853998 ~ 23855353 (+) True G13067
TU16886 other upstream 1436755 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 1564419 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 1607878 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 2485742 21459850 ~ 21463649 (+) True G12362
TU17745 other downstream 240805 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 242344 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 382387 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 578967 25052513 ~ 25056103 (+) True G13445
TU18257 other downstream 1195202 25668748 ~ 25673189 (+) False mfrp

Expression Profile