RNA id: XM_022675359.1


Basic Information

Item Value
RNA id XM_022675359.1
length 4047
RNA type mRNA
GC content 0.48
exon number 14
gene id ccdc9
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24700842 ~ 24722676 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGTGTGGGAGCGGGTGCGGAGGAAGTGTGTGAGCGGCGCCGGTGTCGCTGAAGCTCAGCTCTGTCTCAGACTCGCTGTTTTTCGGGGCGGCGGGTTTTTCTGGAGATTTGCTTAAGAGGTTGTGAGATCCACACCAGTGTCTGAAGACAGGCTTTCAGCCATGTCTGCTGTGGTGGATCTGAAGACGAAGGAGGAGAAGGATGCTGAACTGGACAGAAGGATCGAGGCTCTGCGGAAGAAGAACGAGGCTTTAGTGAGGAGATACCAGGAAATAGAAGAGGATAAGAAGAAGGCTGAACAGGAGGGCATCGCTGTGACGACACCCCGTAAACCCCGCACTCACGAGCCAGATCCAGAACGACGGAAAATCGAGAAAGAGAATTTCACTGTGACCGTTGACCTGTCTAGACCCGCTGGGGAGAAGCGAGTGGTAAATGACAGGAAGCCACCGCCTCATCGTGTTGAACATGGCCCGGAGGACGGGGACGGCCTGCAGCCTCATGGAGACAGTCCCCCCCGCAGGGCAGGGTCCGGTCGGCTGAACAGAGGCGGGCAGCGTGGGGGAGGCCCGCGCTCTGAAAGGAGAGAACCACGCCCAGATAAAGGAGATGTGAGAGCAGACAGACCACCCCGAGAAGGAGACGGGGGAGAGGGACGCCCCTGGGTAGGACGAAGAGGAggtagaggaggaggagaaggaagaggaggaggagaaggaagaggaggagaaggaagaggaggagaaggaagagGAGGGCTGCAACAGGGCGGTGCTGGGTCTGATAGAAAGTCGAAGgaGTGGGAAGAGAAGAGGAGGCAGAACATTGAAAAGATGAATGAAGAGATGGAGAAGATCGCTGAGTATGAGAGAGGTCAAAGGGCCGATGGAGAGAAAAATCCAATCCGGAACTTTCTAGATGATCCGCGGCGCAGCGGACCCATTCCAGACATCGATCGCAAAGAGGGAAGCCGCAGACACGTCCGCAACTGGGGGGGACTAGACTTCGATAACGTGAAGACTGGAGCCGAGGTGGAGAAAGAGTGGACGAGTCGGCGGCCCGGAGGGAAAGGCTCGATGGATATGACTCTGTCTATGACCGGTCGAGAGCGGGCGGAGTACCTGCGCTGGAAAAAGGAGCGAGAGCAGATAGATGAGGAGAGACTCGCTCGTCACCGAAATGCCACCGGCCAATGGAGGCGAGAATGGGATGCCCAGAAAACGGAGAAAATGTTTACTGAGGACCCAGCTGTAGGTGGAGAGGGCACACCAGaacccagcagcagcagaagagACGACGGGAAGAGGCCTCCTAAAGTGCCCACGTTCGGAGACTTTCTGGGCCAAGGCAAACCCAGACGAGAAGAGAGGAACCAGGGAGGACATGGAAGAGGGAAAGGACGAGGTCAGGGCAAGAGCTACAGTATGCATGATAACAGATgggaaggagagaaggaggaggaaggggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaggaagaACAGAAAGACTCTAAACCCACAGGGAAGAGCTCCGGTTCCCCGGCTCACTCCACCCCGAGTCCCCGGGGGCAGCGGACCCCCCGGCCCAGAGTCCGAATCCCCTCCCCACAGGAGACCCTCAGCACCACGGAGCCCACCAAGCCCCTCAGCCCCTTCACTCCTCTGGACGGACACCAGCCCGTATCAGACTGGGGCGAGGAGATGGAGATGCTGTCTCCTAAAAGCAGCCTGGGAGAGAGCCCCCTGAGACCCAGCAGCACCGAGAGCAGCCCCAACCAGAACAAGAGCcgtgagggggagggggaggagcAAGAGGAGGGGGGCGGAGCCGGAGACGCCGCAAACCAACCCGCAGAGTCAGAAACACAGGATAACGCTCAGCCCGTTGTAGAGTCAGCAGCTCCGGTGGTTCAGGAGGAACCGGTATCATCTgatgctgctgctccagctgctgACTCTCCCTCCAGCAGCAGAGCCCTGGAGGAGCCCAGTGTGCCGCCTGCTCAGGACTCGCAGCAGGAGGAGATTGCAGCCCCGACTCTAGAGGCGGATCAGAGGCAGTGTGGCGGTGAGGCGGCAGCAGCAGACGCTGTAGAGGAGCCGCTGGATCAGCCGAGCTCAGGTGCTGTTCTTATTACCGACTTTGAAACCGTGGCTTTCCGCAAGAACTCCCTCACCGTGACTGACATCTGAGCACTAACTAAAGCCCCGCCcctttctctttcatttctaTCATCCTCttatctgctctctctctttctctcaatctttttctcattttttaaattctgtccatctctctgtctgtccctgtgtgatctgtctgatcgTGACTCTGCTAGTCGTGTCTGTTTTATGATAAATGGATCTGTCGCTCTGCTGCTGCCTCTGTGATGGTTCTTCTCTGCCCTGGACCTCAGTCTCCTCTGTGAACCTTCttggctcctcctcctcctcctcatggACACAACTAAAACCTCCCACTTACTGCATCAGGAAACCTTTTCTCTGCATTGCTTGTGGTGTTCCTTCCTTTGGTGTTTAAATGGGAATTTGGGGGTCTTACGATACacattaataatgaattatGAATATCAATTAAATACAGTTAACCTGTGTGGTAGGCCTGTTACAATAACTTACGTTTTGGAACTCATATTTATCCCAATAATATTTTTGAACAATTATTCAAAATTcactaataatatataattgatGTTATAAAAAAAGCATCATCATgaaattacacccttttaaagctCTGCTAAAATCCTCTATTTCTTGTTGTTAACCATATTGTTGATATAGTCGATGTCCAaagaaaaacgtaaaaaaaagtctcaatcgccaaaacagcaactttacaggagagaataAAAATCTTcctaactttcaatggaagttaatgtaaaatgaaatgttatttcaggtcattttgaagtatttctgttAAGAAATTTTggtacagtgtaagggacagtctgttcaaattatgtagtaaactaaaaatccacgaaaatggagatacttgttgttattttattggacagcgatgatatagtaagtgatattgatattttagtAATTCTAACAGGTCTCCTGAGTGGTGTTACACAGCTTAGAAGTAATCACAAAGTTctgtatttaatttgtttaattcactttgaaataaaaaaaagaaaccacaatgtttttaaattttgtattGAAACAGTATTATATCatgtaatacagtaaatatcatCAATAATGAAATTTGTGTATCGTAACACCCCTGTTTGCATATGGTATTGCAAATATGGTCTGTTCATGCATGTTACTCACTGCTTGAGAAAATCCgatgttctttattattattattatttttatttttgtatcgCCTCTATTGATGTGTGCTTAAGCATGAGTGAGTGATGTGGTGCTGAATGGAttcagctcttcctcctgcagacgATGAGCTTCTGTAATTCTGTGCATCCTGCTCTCTTTCTCATCTCATTCGATTTCTGCACGCTCTCATTAACGTAGGAGGGGATAAATGATGCCTAAATTGTTATAcccgagctgattggctgttagGCAGAATGTATGGTAGACAATTGAATTAAGCTGCAAGCATCCACCAACCTTTCCTTCCTTTAACATAAAGCACTGAATGTGTTTAAGGTATTTTATTCTGGGTGGATTTTTATACTGTCCATTTCCCCTTCAGCCTGTATCAGGTAAGGTTATACCGGTAAGGTTACCTCTAGggttattttatacatatttttaatgtttaaaatgtttttaaatcagtagTTGAATGTAGTGAATGTGTAGAAAGGATGCATTTTTGCGTAATTTTGCTGGAAtgcataataaatgttttgctgCTCGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17729 lncRNA upstream 13091 24647283 ~ 24687751 (+) True G13197
TU17692 lncRNA upstream 302190 24393299 ~ 24398652 (+) True G13167
TU17682 lncRNA upstream 345872 24345710 ~ 24354970 (+) False G13159
TU17684 lncRNA upstream 345872 24354067 ~ 24354970 (+) True G13159
TU17650 lncRNA upstream 441425 24257714 ~ 24259417 (+) True G13142
TU17750 lncRNA downstream 1162 24723838 ~ 24726166 (+) True G13214
TU18076 lncRNA downstream 310225 25032901 ~ 25033376 (+) True G13455
TU18079 lncRNA downstream 324662 25047338 ~ 25049073 (+) True G13458
TU18083 lncRNA downstream 335317 25057993 ~ 25058489 (+) True G13462
TU18117 lncRNA downstream 396813 25119489 ~ 25120520 (+) True G13491
XM_022675350.1 mRNA upstream 142238 24519162 ~ 24558604 (+) True tbx4
XM_007258875.3 mRNA upstream 205385 24486822 ~ 24495457 (+) True tbx2
XM_022675286.1 mRNA upstream 227296 23949391 ~ 24473546 (+) False bcas3
XM_022677946.1 mRNA downstream 16215 24738891 ~ 24776461 (+) True kiaa0753
XM_022675363.1 mRNA downstream 66600 24789276 ~ 24873126 (+) True LOC103028424
XM_007236783.3 mRNA downstream 257519 24980195 ~ 24982031 (+) True LOC103027752
XM_015602313.2 mRNA downstream 349626 25072302 ~ 25086749 (+) False lipt2
XM_007236777.3 mRNA downstream 361153 25083829 ~ 25086749 (+) True lipt2
TU17542 other upstream 845489 23853998 ~ 23855353 (+) True G13067
TU16886 other upstream 2188206 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 2315870 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 2359329 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 3237193 21459850 ~ 21463649 (+) True G12362
TU17784 other downstream 133257 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 329837 25052513 ~ 25056103 (+) True G13445
TU18257 other downstream 946072 25668748 ~ 25673189 (+) False mfrp
TU18843 other downstream 2286872 27009548 ~ 27040529 (+) True G14047
TU19049 other downstream 3327453 28050129 ~ 28056900 (+) False LOC103031366

Expression Profile