lipt2 (lipt2,LOC107677087)


Basic Information

Item Value
gene id lipt2
gene name lipt2,LOC107677087
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25072302 ~ 25086749 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236777.3
ACAAGTCGTTTCGTTTCGTCTGTTTTGGTTAATCTTGTCTTTTTGATAAACTCTTGGGGCAACATGGCCGCCCGCTGTTACCctcatactgtacacacactttaaactgaGCACCAGAGACAgcagacagtagagacagtgtgTGCTGGCTACTGGAAACAGTGTGACAGGAgagtcatttattcatttatttttcagagGAAACCCGCGTTTGATGTAAACAGgcaAGACCATGCAAACCTGAGAGCCTTTCGATTCTCCAAAATCAAGATGTCACTTGGGAAGACTCCAGTCAGTGTTGTGAATCTGGGGAGGGTTGCTTACCGCAGTGCTCTACAGATACAGCAGCACTATATCAGACAGCATTTTGATTCTTCTAACCCGACTCCGAACACCCTGCTGCTCTGTGAGCACTCTCCTGTTTACACTGTTGGGATTAGGCCAGTTCAGTACCCCGCTGAAGAGGAGCAGAGACTGAAAGATCTGGGTGCGGACTTCTTCCGCACAAACCGAGGAGGCCTGATAACTTTCCACGGGCCAGGGCAGCTGGTCTGTTACCCCATTCTTAACCTGGGCTGCTTTAAGAAGAGTGTGAGGTGGTATGTGTGTGAAATAGAGAAGACAGTGATTAACATGTGCAGCAAGTTTGGGATCAAAGCCTCCACGTCTCCGGACACCGGAGTCTGGGTtggaaataacaaaatatgtgCTATTGGCATCCACTGTGGGAGATATGTGACATCTCATGGATTGGCTCTGAACTGCAACACTGATTTGAGCTGGTTTGAGAACATTGTGCCCTGTGGGATTGTGGGAAAAGGAGTCACTTCGCTCAGTCGAGAGCTTGGTCGTGATGTCACGACTGAAGAGGCCGCACCAGTGTTACTCAAGGCTTTTAGTGAACAGTTCAACTGCTGTCTGGTAAAAGCTGATAACTCCTGTGAGCAGACCCAACAGACtttaaactgatataaatgtaaatcaGCGACTATTTAATTGTGGATTGCAACACTAATTCTGCATACTGGTCTGCTTGTAGGTTACACTGCAGATTCTTTGCTATAATAAAAGGTTAAACTAAGAGTCAATGAACCTCA
>XM_015602313.2
GCATGGTGACGGGCTCCAGCAGGATCTCCTGGCAGACCGGACACCGCGCCTCCTCCAGAGTCAGGGACCGGGCAGgcaAGACCATGCAAACCTGAGAGCCTTTCGATTCTCCAAAATCAAGATGTCACTTGGGAAGACTCCAGTCAGTGTTGTGAATCTGGGGAGGGTTGCTTACCGCAGTGCTCTACAGATACAGCAGCACTATATCAGACAGCATTTTGATTCTTCTAACCCGACTCCGAACACCCTGCTGCTCTGTGAGCACTCTCCTGTTTACACTGTTGGGATTAGGCCAGTTCAGTACCCCGCTGAAGAGGAGCAGAGACTGAAAGATCTGGGTGCGGACTTCTTCCGCACAAACCGAGGAGGCCTGATAACTTTCCACGGGCCAGGGCAGCTGGTCTGTTACCCCATTCTTAACCTGGGCTGCTTTAAGAAGAGTGTGAGGTGGTATGTGTGTGAAATAGAGAAGACAGTGATTAACATGTGCAGCAAGTTTGGGATCAAAGCCTCCACGTCTCCGGACACCGGAGTCTGGGTtggaaataacaaaatatgtgCTATTGGCATCCACTGTGGGAGATATGTGACATCTCATGGATTGGCTCTGAACTGCAACACTGATTTGAGCTGGTTTGAGAACATTGTGCCCTGTGGGATTGTGGGAAAAGGAGTCACTTCGCTCAGTCGAGAGCTTGGTCGTGATGTCACGACTGAAGAGGCCGCACCAGTGTTACTCAAGGCTTTTAGTGAACAGTTCAACTGCTGTCTGGTAAAAGCTGATAACTCCTGTGAGCAGACCCAACAGACtttaaactgatataaatgtaaatcaGCGACTATTTAATTGTGGATTGCAACACTAATTCTGCATACTGGTCTGCTTGTAGGTTACACTGCAGATTCTTTGCTATAATAAAAGGTTAAACTAAGAGTCAATGAACCTCA

Function

symbol description
lipt2 Predicted to enable ligase activity; lipoyl(octanoyl) transferase activity; and octanoyl transferase activity (acting on glycine-cleavage complex H protein). Predicted to be involved in positive regulation of oxygen metabolic process and protein lipoylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in mitochondrion. Orthologous to human LIPT2 (lipoyl(octanoyl) transferase 2).

NR:

description
PREDICTED: putative lipoyltransferase 2, mitochondrial

GO:

id name namespace
GO:0009107 lipoate biosynthetic process biological_process
GO:0006464 cellular protein modification process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016415 octanoyltransferase activity molecular_function
GO:0016874 ligase activity molecular_function
GO:0033819 lipoyl(octanoyl) transferase activity molecular_function

KEGG:

id description
K23735 LIPT2, LIP2; lipoyl(octanoyl) transferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236777.3 True 1097 mRNA 0.46 3 25083829 25086749
XM_015602313.2 False 948 mRNA 0.49 3 25072302 25086749

Neighbor

gene id symbol gene type direction distance location
LOC103027752 NA coding upstream 90271 24980195 ~ 24982031 (+)
LOC103028424 LOC108425893 coding upstream 199176 24789276 ~ 24873126 (+)
kiaa0753 NA coding upstream 295841 24738891 ~ 24776461 (+)
tbx4 tbx4 coding upstream 513698 24519162 ~ 24558604 (+)
tbx2 tbx2,tbx2b,LOC107685069,LOC107757046 coding upstream 576845 24486822 ~ 24495457 (+)
LOC111194299 NA coding downstream 61528 25148277 ~ 25161641 (+)
eif4h eif4h,LOC107704308 coding downstream 281945 25368694 ~ 25378622 (+)
rffl rffl coding downstream 295412 25382161 ~ 25400864 (+)
LOC103043872 tfdp2,LOC108426935,LOC108277808,LOC107744026,LOC107704305,LOC107680101,LOC107720963 coding downstream 324537 25411286 ~ 25468689 (+)
LOC103044362 LOC108277440,LOC108426936 coding downstream 386828 25473577 ~ 25506044 (+)
G13462 NA non-coding upstream 13813 25057993 ~ 25058489 (+)
G13458 NA non-coding upstream 23229 25047338 ~ 25049073 (+)
G13455 NA non-coding upstream 38926 25032901 ~ 25033376 (+)
G13214 NA non-coding upstream 346136 24723838 ~ 24726166 (+)
G13212 NA non-coding upstream 358339 24713326 ~ 24713963 (+)
G13491 NA non-coding downstream 32740 25119489 ~ 25120520 (+)
G13504 NA non-coding downstream 96556 25183305 ~ 25183545 (+)
G13514 NA non-coding downstream 144233 25230982 ~ 25231843 (+)
G13520 NA non-coding downstream 207720 25294469 ~ 25298227 (+)
G13545 NA non-coding downstream 314271 25401020 ~ 25403118 (+)
G13445 spcs2,LOC107677086 other upstream 16199 25052513 ~ 25056103 (+)
G13237 NA other upstream 215280 24855933 ~ 24857022 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other upstream 349626 24700842 ~ 24722676 (+)
G13067 NA other upstream 1216949 23853998 ~ 23855353 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 2554522 22473652 ~ 22517780 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 160247 25246996 ~ 25339435 (+)
LOC103045399 LOC108426937,LOC108277812 other downstream 474884 25561633 ~ 25642743 (+)
mfrp mfrp other downstream 574149 25660898 ~ 25673236 (+)
LOC103023549 gpr171 other downstream 701835 25788584 ~ 25795084 (+)
G14047 NA other downstream 1922799 27009548 ~ 27040529 (+)

Expression


Co-expression Network