RNA id: TU18843


Basic Information

Item Value
RNA id TU18843
length 2151
RNA type TUCP
GC content 0.42
exon number 2
gene id G14047
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 27009548 ~ 27040529 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAAGGATAAAGcatcggtttttaattttggtttcTTCACAACCTTTAAACACAATGTGTGTAACATTATCATCACTATAAAATGTgagattctttttttattcaagaCAGTCATCAGAATGCCAATGTTAAGACAATGTGCCTGATTCGCTTTTATCAAAAGAGCTCGACAGAGCGGggaatgcacaaaaaaataatccaaagaAAAACTATTCGTCAAGcagatttatttaccaaataataaaaaaggacaaaagtgCCAGTTTCTGAATGTTAGATATGCTAAGCaacatttttgtaataaaaaaacaaaacaaaaaaaaaaacctactacTCTCCTGAGCCCACCTCTTCCTTCACCACCCcttagcttcagtgctaatgTCTCTTTAGCGCTCTGCGCGCTACAAAACTCCAGACTTGTGTCCAGTGGAATGACCAGAAATGAATTTGTTGACTAAACTCCAGATGCAAACTTAAACCACAGCCTGGAGGAAGATTTTTACCTCAGACTTTCAGGCCAGCGGCTGTGGTAGCTTAGCATAGCTGCGTTAGCCTTAGTTAACTGTGCTAGCCTTAGTTAGCTGTGTTGGTTTCCATTCTGACACTTTTGAAACTAAGAAAGCTAAACGCTAGCTTGTGGAATTGAGCAGAAGACACTCTTAAATGAAGATCTGTGTGAaccattatttatttctttattttctagaTTTATTTTCAAGCAAACAAAGCAGCCAGGCCTTGgttcagttatttatttttttatttgaagagTTCCTTCAATGACTAAACCAGCGAGCAGATGCACTTTCCCCTCATCCGATATCCCCGCTTTTCACTCCACTCCAAACTCCAGCCTCTTTTTAAaggaatatttaaacatttttcatcataatgtccatcagttcagttcaaccCGTCCCACAGAAAATAATTCTGACCCAGAAAACCCATGAAATCCAAATTTCACTTAATAGAAGTCGATAAGGCAGACGCTCAGGTTTTTTTACACAATAGTAACCATTCACAATGCACAAGTGCTGCCCATTACGCTTCTTTCTATGTTCTGATGGGAATCCACAGGTTTTCATCGTGTCAAAACAtggaaaatgttatatatattatcGTCCATGATAACCGACTCTATGCTACAGATTTAGCGGTCAGACGTTAATTTGAAAAATGAAGTATCCCTTTAAACCCGAAAATCTGACTCCACCCCCCACCCACTTAAGGTCAAAGATTCGCTACAAAAACTCACGTCCTGCTCATTCATTCGGCTTCCTTTCACCAGAAACAGTGTTCACCCATACGCAGGATATATCATCACGCCGCTACCGCAgagtacaaaaaagaaaaaacaaacaaacaaaagttaCCCAATGTGGGAATAATCGATCAATAGCACAAGCCTCGTCTTACAGCATGGACATGGTGATTCATGGGGGGGAGGGGGCGTGGCCAGAAAAGACAGGGGAACCCACAGAGGAGCTGGAGAGAAAGACCgacagagatagagatggagagagatagaggggtgGGTGTGTGGTGGGCACAGGGAGGGATGTTTGTGTGTCCGAGGGAAACAACCACGCAACATTTCAATGATTGAGAAACGGACACTTTAAAGAGTGGCGTCAAGGTCTTGTGATGTCAGGaggcaaacaaataaaaagttcaaccaaagaaaaaaaaaaaatcaagtgtcCAAATTTCAGAGTCTATTGTAGAAAAGGGAGAAGTGTTGCAGagagagagagagagagagagagagagagagagagagagagaaagagagagagaggctgggtTTAAGAAGTGTCTTGCTGAGGAGTTCTCACAGAGCCTGACTGCTCACACTGTTTAtgcactcactctctcgctcgctcactctctcgctcactctctcgctcactctctcgctcactctctcgctcactctctcgctcactctctctttgcTATTCTGGTATGCCCAGATTTGCCTCTATCGccccccacccctctctctctctttctctctctcaataacacacacaaaaactctcttagactccacacacacacacacacgttaacTCACAAACCCTGTcacccctctttctctctcactgtccaAATAGTTTGGACACAGTTAATTCAGGTCTCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18828 lncRNA upstream 498 26983987 ~ 27009050 (+) True G14033
TU18806 lncRNA upstream 28415 26978601 ~ 26981133 (+) True G14013
TU18805 lncRNA upstream 36708 26971224 ~ 26972840 (+) True G14012
TU18811 lncRNA upstream 69402 26937907 ~ 26940146 (+) True G14018
TU18809 lncRNA upstream 78526 26929577 ~ 26931022 (+) True G14016
TU18872 lncRNA downstream 207764 27248293 ~ 27300283 (+) True G14074
TU18878 lncRNA downstream 404482 27445011 ~ 27445322 (+) True G14080
TU18883 lncRNA downstream 465386 27505915 ~ 27593437 (+) True G14084
TU18891 lncRNA downstream 525985 27566514 ~ 27619814 (+) True G14089
TU18898 lncRNA downstream 546406 27586935 ~ 27643122 (+) True G14096
XM_022675737.1 mRNA upstream 44858 26959384 ~ 26964690 (+) True pgam5
XM_022675740.1 mRNA upstream 44858 26959384 ~ 26964690 (+) False pgam5
XM_007237662.3 mRNA upstream 300776 26701559 ~ 26708772 (+) True LOC103037665
XM_022675689.1 mRNA upstream 334533 26497552 ~ 26675015 (+) True dscaml1
XM_022675694.1 mRNA upstream 334533 26497552 ~ 26675015 (+) False dscaml1
XM_022677973.1 mRNA downstream 19616 27060145 ~ 27103854 (+) True LOC107197223
XM_022677978.1 mRNA downstream 63503 27104032 ~ 27112068 (+) True LOC111194302
XM_007260749.3 mRNA downstream 533023 27573552 ~ 27578060 (+) True eef2kmt
XM_007260750.3 mRNA downstream 533026 27573555 ~ 27578060 (+) False eef2kmt
XM_022675797.1 mRNA downstream 551056 27591585 ~ 27603143 (+) True c2h16orf89
TU18257 other upstream 1336359 25668748 ~ 25673189 (+) False mfrp
TU18064 other upstream 1953445 25052513 ~ 25056103 (+) True G13445
TU17784 other upstream 2152526 24855933 ~ 24857022 (+) True G13237
TU17745 other upstream 2292322 24714351 ~ 24717226 (+) False ccdc9
TU17747 other upstream 2292322 24715890 ~ 24717226 (+) False ccdc9
TU19049 other downstream 1009600 28050129 ~ 28056900 (+) False LOC103031366
TU19373 other downstream 2088538 29129067 ~ 29129373 (+) True G14444
TU19421 other downstream 2354631 29395160 ~ 29398166 (+) True G14480
TU19448 other downstream 2633645 29674174 ~ 29689149 (+) False nubp1
TU19455 other downstream 2692776 29733305 ~ 29742723 (+) True G14505

Expression Profile