Gene
RNA
| Item | Value |
|---|---|
| gene id | G14013 |
| gene name | ankle2,LOC102795364,LOC102797792 |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035898.1 |
| NCBI id | CM008301.1 |
| chromosome length | 34292151 |
| location | 26978601 ~ 26981133 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| ankle2 | Predicted to enable protein phosphatase 2A binding activity. Predicted to be involved in negative regulation of phosphorylation and positive regulation of protein dephosphorylation. Predicted to act upstream of or within cell division and mitotic nuclear membrane reassembly. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 16. Orthologous to human ANKLE2 (ankyrin repeat and LEM domain containing 2). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU18806 | True | 1103 | lncRNA | 0.45 | 5 | 26978601 | 26981133 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pgam5 | pgam5 | coding | upstream | 13911 | 26959384 ~ 26964690 (+) |
| LOC103037665 | NA | coding | upstream | 269829 | 26701559 ~ 26708772 (+) |
| dscaml1 | dscaml1,LOC107752281 | coding | upstream | 303586 | 26497552 ~ 26675015 (+) |
| mindy4b | fam188b2,LOC107598659 | coding | upstream | 1149534 | 25816743 ~ 25829067 (+) |
| clrn1 | clrn1 | coding | upstream | 1170109 | 25801597 ~ 25808492 (+) |
| LOC107197223 | NA | coding | downstream | 79012 | 27060145 ~ 27103854 (+) |
| LOC111194302 | NA | coding | downstream | 122899 | 27104032 ~ 27112068 (+) |
| eef2kmt | eef2kmt | coding | downstream | 592419 | 27573552 ~ 27578060 (+) |
| c2h16orf89 | cunh16orf89 | coding | downstream | 610452 | 27591585 ~ 27603143 (+) |
| LOC103031039 | gsg1l,LOC103031039,LOC108436662,LOC107690243,LOC107738642,LOC107685933 | coding | downstream | 722081 | 27703214 ~ 27748186 (+) |
| G14012 | NA | non-coding | upstream | 5761 | 26971224 ~ 26972840 (+) |
| G14018 | NA | non-coding | upstream | 38455 | 26937907 ~ 26940146 (+) |
| G14016 | NA | non-coding | upstream | 47579 | 26929577 ~ 26931022 (+) |
| G14002 | NA | non-coding | upstream | 88509 | 26889690 ~ 26890092 (+) |
| G13908 | NA | non-coding | upstream | 155328 | 26819691 ~ 26823273 (+) |
| G14033 | NA | non-coding | downstream | 2854 | 26983987 ~ 27009050 (+) |
| G14074 | NA | non-coding | downstream | 267160 | 27248293 ~ 27300283 (+) |
| G14080 | NA | non-coding | downstream | 463878 | 27445011 ~ 27445322 (+) |
| G14084 | NA | non-coding | downstream | 524782 | 27505915 ~ 27593437 (+) |
| G14089 | NA | non-coding | downstream | 585381 | 27566514 ~ 27619814 (+) |
| LOC103023549 | gpr171 | other | upstream | 1183517 | 25788584 ~ 25795084 (+) |
| mfrp | mfrp | other | upstream | 1305365 | 25660898 ~ 25673236 (+) |
| LOC103045399 | LOC108426937,LOC108277812 | other | upstream | 1335858 | 25561633 ~ 25642743 (+) |
| LOC103040166 | LOC103040166,LOC108426893 | other | upstream | 1639166 | 25246996 ~ 25339435 (+) |
| G13445 | spcs2,LOC107677086 | other | upstream | 1922498 | 25052513 ~ 25056103 (+) |
| G14047 | NA | other | downstream | 28415 | 27009548 ~ 27040529 (+) |
| LOC103031366 | LOC105899914 | other | downstream | 1068996 | 28050129 ~ 28077818 (+) |
| rbfox1 | rbfox1 | other | downstream | 1130913 | 28112046 ~ 28607089 (+) |
| G14444 | NA | other | downstream | 2147934 | 29129067 ~ 29129373 (+) |
| G14480 | NA | other | downstream | 2414027 | 29395160 ~ 29398166 (+) |
