G14012


Basic Information

Item Value
gene id G14012
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26971224 ~ 26972840 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU18805
CAAATACTTTCTCCTTTCACAGGTAATAAAATTGGACTAGAATTGCATGCATTAGGGCCAGCAcggacaaaacaaacaaacaaacaaataaaaactgaccaTCATGGCGACTGCAGCTCAACTTCGATTTAGTGttggcactgctgaggaacGCCTCTGTTCTGAGGGACAGGGATCAGACCGAGGTCATTAAAGAGATAGTTTGGTCCAAACTATCActttaatacattatattattacatttttactgttgtttttttattcttttgaaaTAGCTCAGTTTGTGTGTGGTtgtctttatacacacacacacacacacacacctcccagTTTCACCAAAAGGCACTAAAGAAGCTCGAAGAAGCATGGTCCTAAATTAGGTCAAAGGTCGGGACTACAcgaaaaatgcaaacaaaaaaaagtgatagTTCAACAAACGATCACGGTTCATATGTACTCAGATTCCTCTCTGATGCTGCAAAGTAACATCTATTGAACATACTTGTGTGGATTTTGCGGACATGAAATTTGCGGGTATGAAACTCTCTACAAACAAGAGCAATTTATAGGTCTCATTTTAGTAAACACCATGCTAACTGGTGGGTTTACAAGCTTCCATCACTTATGATGCTGCATTCTAATGTAAAAGCAGtaatattatacagtttataatcacttatttagttttttgcccGTTTTTCCTCTCTAATTCTCTAGGCCTTTTATCGCACCAAGGTATTAGGACTcctcccatcactagtaatgccccaaacgtcagaagggtgaagactagcacacgcctcgtccgctgatggagaaacagcatgatctactgtactctctctctctctctctctcagactccggctgctgatggagaaacagcatgctCTACTCTTCTTTTCGTCTGGACAAGAAAAACGAGCACAATAGTGTTCTGTATAAATGGCTAAGTTTTTACTTTTCAGTTCTTCGGCTGAACATGATAGCACTTTCCTGCCATTTCTGGCTGACTCGTCTTGGTTGGCAAATATTCTGTGCACCTCTTGAACTATCGCTTTTAtgagagatgttttttttttgtttgtttttaagttttGCTGTTGTAAATACCTGCTGAAAAATGTTTTACGCATGTGCAAAGCAGTACTTAAAGAATTACTAACGAAAAGAAGCTTTAAAAGTGCAAAGCAAAGGCAAACTTTAATTATCATTACCGTCACACATTTATAATCCACAACTGAGACTCGTTTCACATTCCAAAACAACGTTAAAGCGTTAGAACAGGTCATAGTTTGAGAACTGAACACTGCTGATGCCCACTAGGGGGCGCAGTGACGTTTAGAGAGGCTGCAGAAAATTAAGGCAGAGAGACGGACGTTCTTTAATGGAATATGACTTTTGAGCTACTGagttacactgaaaaaaataaaacattttgtttttaatttaacttaaattaattttatttaatttaatgtccCAATTAGGAGCGGTTTTATGTGCGAGGGAGGATCAGGGTGTTGTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18805 True 1531 lncRNA 0.43 3 26971224 26972840

Neighbor

gene id symbol gene type direction distance location
pgam5 pgam5 coding upstream 6534 26959384 ~ 26964690 (+)
LOC103037665 NA coding upstream 262452 26701559 ~ 26708772 (+)
dscaml1 dscaml1,LOC107752281 coding upstream 296209 26497552 ~ 26675015 (+)
mindy4b fam188b2,LOC107598659 coding upstream 1142157 25816743 ~ 25829067 (+)
clrn1 clrn1 coding upstream 1162732 25801597 ~ 25808492 (+)
LOC107197223 NA coding downstream 87305 27060145 ~ 27103854 (+)
LOC111194302 NA coding downstream 131192 27104032 ~ 27112068 (+)
eef2kmt eef2kmt coding downstream 600712 27573552 ~ 27578060 (+)
c2h16orf89 cunh16orf89 coding downstream 618745 27591585 ~ 27603143 (+)
LOC103031039 gsg1l,LOC103031039,LOC108436662,LOC107690243,LOC107738642,LOC107685933 coding downstream 730374 27703214 ~ 27748186 (+)
G14018 NA non-coding upstream 31078 26937907 ~ 26940146 (+)
G14016 NA non-coding upstream 40202 26929577 ~ 26931022 (+)
G14002 NA non-coding upstream 81132 26889690 ~ 26890092 (+)
G13899 NA non-coding upstream 122284 26769291 ~ 26848940 (+)
G14013 ankle2,LOC102795364,LOC102797792 non-coding downstream 5761 26978601 ~ 26981133 (+)
G14033 NA non-coding downstream 11147 26983987 ~ 27009050 (+)
G14074 NA non-coding downstream 275453 27248293 ~ 27300283 (+)
G14080 NA non-coding downstream 472171 27445011 ~ 27445322 (+)
G14084 NA non-coding downstream 533075 27505915 ~ 27593437 (+)
LOC103023549 gpr171 other upstream 1176140 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 1297988 25660898 ~ 25673236 (+)
LOC103045399 LOC108426937,LOC108277812 other upstream 1328481 25561633 ~ 25642743 (+)
LOC103040166 LOC103040166,LOC108426893 other upstream 1631789 25246996 ~ 25339435 (+)
G13445 spcs2,LOC107677086 other upstream 1915121 25052513 ~ 25056103 (+)
G14047 NA other downstream 36708 27009548 ~ 27040529 (+)
LOC103031366 LOC105899914 other downstream 1077289 28050129 ~ 28077818 (+)
rbfox1 rbfox1 other downstream 1139206 28112046 ~ 28607089 (+)
G14444 NA other downstream 2156227 29129067 ~ 29129373 (+)
G14480 NA other downstream 2422320 29395160 ~ 29398166 (+)

Expression


Co-expression Network