rbfox1 (rbfox1)


Basic Information

Item Value
gene id rbfox1
gene name rbfox1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28112046 ~ 28607089 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19032
GCGTTGTGTACCAGGACGGATTTTATGGTGCAGATATTTATGGTGGTTACGCTGCCTACCGATATGCCCAGCCTGCCACCGCCACTGCTGCTGCCTACAGTGACAGTTACGGACGAGTTTATGCTGCCGACCCCTACAACCACGCACTTGCTCCAGCAGCCACATACAGCGTTGGTGCCATGAACGCTTTCGCGCCCCTGACCGATGCCAAGACCAGGAGTCACGCGGATGATGTGGGTCTCGTTCTTTCTTCATTGCAGGCTAGTATATACCGAGGTGGATACAGTCGTTTCGCtccatactaaaaaaaaaacaacaacaacaacaacaacaactacaacaacaacaaaagaaaacaaaacctaTTGAAACCTAAACGAGAATCTTCCTGTGGGGTAAAGAGAGAATAATTCAAGAGGCCTGGGTATTGCAATACATGCAGTAGTGCATCATTTTGGCATCTCTTAAGAGAGAGGACAAAAATGGATATTTTTCATCTTATACCTCAGATATTTTGTgctgtgtattttaatattgtgggtttttaatttctaaagaTTACATAGATTGTTGGCTGTAGAGGTTTCTGTGGTGATCTAGAGAGCTGCTAGATTTTAAAAAGAGacgagataaaaaaaaaaaacacattaaagatACAAATTGTTAGGGATTTATCATGTAAATGAATTATTGAATTATGATGTATGATAAATATTAAGTCCCTTGGGGTTATCATATTTTGTAAGAGTGTAAGTGACTACAGTAGTCAAGTGATTTTCTGCTCTTCGTTTTtcgttttctttcattttttttttttaggccttTCGGTTCTTTTTTGgttcttttattaattattattaaatattatattgttattattatttctggGTGTTTTGGGTCACaagtttgtattattattattttattttatttttcgcTTGTGGTTTCCATGCTGGAAGGATAacgagataaagagagagaaaaagaacgaAAGGTAGGACGAacgaaagaaaggaaaagagagaaggaaagattgatacagagttatacagcaAAAAGTGAGTGTAAGACGGCCACACCTCAGGCGTAaagagaaagcgagaaagaatgcaagagagagagagagagaaaaagaaagagaaagagagagagagaggtgggccCGAGGAGAAGCAGCACCCTGAGGGTGGTACAGGGCCGTACGCTACAGAAGGAGAGAAACCACGGAGGCATCGATTCTTTCAGACGTCTGATATCAGTCATCACTCAAAGCCAAAGTTTACGTTCCCAGGATGTTGTTTCGTGTTCGGAATTTTACATAGCGGCTCTTAGATACAGTCCACAAAAACTTCACCACGacagtattttactgtttaccTGTTTATCTAGTTCGTAGATCAGGCCCTTAACTAGTTTATGCCAACCACAAGAAGTTCTTTTTATATTACGGTACTTCCAGTATATTGATTGATATAATTGCTGACTTTTATATTATGGGAGagataaa
>TU19033
GCGTTGTGTACCAGGACGGATTTTATGGTGCAGATATTTATGGTGGTTACGCTGCCTACCGATATGCCCAGCCTGCCACCGCCACTGCTGCTGCCTACAGTGACAGAAATCATTTCGTCCTCGTTGCAGCAGATGAAATTTCTTGTAACACCTCTtcagTTACGGACGAGTTTATGCTGCCGACCCCTACAACCACGCACTTGCTCCAGCAGCCACATACAGCGTTGGTGCCATGAACGCTTTCGCGCCCCTGACCGATGCCAAGACCAGGAGTCACGCGGATGATGTGGGTCTCGTTCTTTCTTCATTGCAGGCTAGTATATACCGAGGTGGATACAGTCGTTTCGCtccatactaaaaaaaaaacaacaacaacaacaacaacaactacaacaacaacaaaagaaaacaaaacctaTTGAAACCTAAACGAGAATCTTCCTGTGGGGTAAAGAGAGAATAATTCAAGAGGCCTGGGTATTGCAATACATGCAGTAGTGCATCATTTTGGCATCTCTTAAGAGAGAGGACAAAAATGGATATTTTTCATCTTATACCTCAGATATTTTGTgctgtgtattttaatattgtgggtttttaatttctaaagaTTACATAGATTGTTGGCTGTAGAGGTTTCTGTGGTGATCTAGAGAGCTGCTAGATTTTAAAAAGAGacgagataaaaaaaaaaaacacattaaagatACAAATTGTTAGGGATTTATCATGTAAATGAATTATTGAATTATGATGTATGATAAATATTAAGTCCCTTGGGGTTATCATATTTTGTAAGAGTGTAAGTGACTACAGTAGTCAAGTGATTTTCTGCTCTTCGTTTTtcgttttctttcattttttttttttaggccttTCGGTTCTTTTTTGgttcttttattaattattattaaatattatattgttattattatttctggGTGTTTTGGGTCACaagtttgtattattattattttattttatttttcgcTTGTGGTTTCCATGCTGGAAGGATAacgagataaagagagagaaaaagaacgaAAGGTAGGACGAacgaaagaaaggaaaagagagaaggaaagattgatacagagttatacagcaAAAAGTGAGTGTAAGACGGCCACACCTCAGGCGTAaagagaaagcgagaaagaatgcaagagagagagagagagaaaaagaaagagaaagagagagagagaggtgggccCGAGGAGAAGCAGCACCCTGAGGGTGGTACAGGGCCGTACGCTACAGAAGGAGAGAAACCACGGAGGCATCGATTCTTTCAGACGTCTGATATCAGTCATCACTCAAAGCCAAAGTTTACGTTCCCAGGATGTTGTTTCGTGTTCGGAATTTTACATAGCGGCTCTTAGATACAGTCCACAAAAACTTCACCACGacagtattttactgtttaccTGTTTATCTAGTTCGTAGATCAGGCCCTTAACTAGTTTATGCCAACCACAAGAAGTTCTTTTTATATTACGGTACTTCCAGTATATTGATTGATATAATTGCTGACTTTTATATTATGGGAGagataaa
>TU19039
atgtgtccaaatctgcttgtttaaaaaaaatcactcattaTTTATATCTGTACAATCCAACCCACGTTTGTAagagtgtggagagtgtgtAAATTTAAATATAGGAGTTTAACAATCTGAATATTGCCAGATTTGTGGTTAAACAATCCAAATTATTAGCAGTAAAAGCTCTAATATCAAGGACAAGCATAAAACAGCTATTGGTTTATGAATTTGCTGAatgcttctttttttctaaCTATTGAGATAAACAGTTAAATTGATTACAATTGTCTAATCATGTAGACTGATAGAGATTACTGGTAGAGTTGTGCATGCCATTTTAAATGAGTTGTTAAAAACCTCTGcacattttaatgtttgtacGTCTTTTCATATGCCGATGAGCTCTCACAAATCTTTCGCAGCTTGCCATTTGTGTGCAACCGATCAGAAATAAGTGTGCAGAGAAGGAAAAAAGTTTATGTTGTGTATGCAtaacaattaacaattaatCTTAGCAGTTTATGAACAACTTAAAAAATGTCGGTTTTGCAAGTGTTTCTCAAAAGTTTTCTTAGTGTCCAAAATTGCGAAAGAATTTTAAAGTAGGTATTTGTTGATTCTGCCTCTAATTCTGCACAGAAAAAGCACCACCACTGATTTATAGAAACATTTATGCTCAGAACTGTACAGAATTGAAGGACCTGTAGGAGTTTCACATGAGTCCAGAACCTGTAATATCTACTCTACccatcattaaataaatatagccaaaatatgtttaatactaAGAAGATACTACAAGATAACCACAAACTAATCTGTATTGtgttagaaattagaaatactactactaataaaaataataataataataataataataataataataataataataataataaaccaacCGTGTATTAAATTTGATCTGTTCAGTGGAAATGTTCTCTTATACGAAATACACAGCTGTGTAATGTTTTAGATTTAGTGTGGTAGACCAACTGTTAGAGAAAGGTGTCTCATTTTTTATGAAATCATACTCAAGATTTATATCAACACTTTACAAGTAATGCAATCATTATGTAGATATGATCATAGTATTTTTGTCAACTGTACTATTTTGCACACACGACCTGCAGTTTTTTCATCACTTCTCTCAGCTTGTGGGACGTTACATTGTCTgttctttcctctttttttgttgtttgtttcttgtttgtttttatctggttgaatttttttttttttttttttttttttcgtttcgCTTCCTTTTGGTTTTGATATCATTTTTAATGTGACATCCTTTGTATTGTTATTTTCTAGAAACACAGCCTTTACACTTTGAAACTGTTTGATTATCGAGAAACTGAGAAATATAGGAATTGTGAAAAAGATATctatatgtaaatatgaataATGATAAATATGTCATTTACAAGTGCTACACAAACAAGCTGTCGAGGTGTCCTTGAAGAGTCGCAGCTTGTGCTGTGCATACGCGAAGAACTTCCCTACATGTTGTTTACAGTATACCTACTTAGAGGTGTTTGTCACATatctcattttcttcttcttcttttttccttttttgggttatttttttgtatttataaaaaagggttaaaatacataaaatacaagcgaaaaaaaaaaacaacaaaaaaaaaacagcagcttaaATTTATCCAGCTGCAAAAATATCCTcttgtgtactgtgtgtgtgtcctacCACACAACTGGGCAAAAATATCGTATCCACTGCTGTAACTCTGCTATACTTTCTGCTTCCAGTAGGTGTTGTGAACAGGCCTTCTCCTTGTCATTGTATGTGCATGCACTATGATCCGCATAACAGTAACCATCAATAAAGTTTCTCAAGATAAGGAGAA
>XM_022677983.1
CGTGCGTGCCTGCCTCTGCgaatctgtgtgtatgtgtgtgtgcgtgcatgtgcgAGAACGAAAAAGCGCGCGCGCACGAgcgcactcactcactcacgcacgcacgcacgcatacgcacgcacgcacgctcGCTCGCTTTTGCACCCGTCGGACGAAAGAAGGGATGTGAAGGCTCGAGCCGCGCGCCGCGCTGCTCAGATCTCGGAGCTTCGCGCGCTTCtccctcctgctcctcctcctcgcgCCCTCCTCGGCTCCGTCCAGCTCTCGCGCGCGCCGCGCTGTTTGTTTCGCTTTTCACGCACCGGAGAGATTCCAGGGCAACAAATGAGTTGTGACGCCGACCAACTCAGGgGTAATCAGGACGCCCCAGCACCCCCAGAGCCCATGGCCCAGCCTTACCCCTCTGCCCAGTTCGCTCCCCCTCAGAACGGCATCCCTGCTGAGTACCCTGCCTCACACCCCCACCCAGCTCCAGAATACCCGGGCCAGACCGCCGTGCCCGACCACACGCTGAACATGTACCCCCCAGCGCAGACGCACAGCGAGCCCAGCGCAGACACCAGTGTACAGACCGTCTCTGGCACAGCCACAcAGACAGACGATGCAGCACAGACAGACAGCCAGCAACAGACACAGTCGTCCGAAAACACGGAAAACAAGACACAGCCGAAGCGGCTCCACGTCTCCAACATCCCTTTCAggttcagagatccagaccTCAGGCAAATGTTTGGCcaatttggtaaaatcttaGATGTTGAGATCATTTTTAATGAGAGAGGATCTAAGGGTTTTGGTTTCGTAACTTTCGAAAGTAGTGCTGATGCGGACAGGGCGAGGGAGAAATTACACGGCACGGTGGTAGAAGGCCGTAAAATAGAGGTTAACAATGCAACAGCACGGGTAATGACAAACAAAAAGACGGTCAACCCATATGCAAACGGCTGGAAGTTGAATCCTGTTGTGGGTGCAGTCTACAGCCCAGAATTCTATGCAGGTGAGTGTATGAtgtatccctCCAGCGTTGTGTACCAGGACGGATTTTATGGTGCAGATATTTATGGTGGTTACGCTGCCTACCGATATGCCCAGCCTGCCACCGCCACTGCTGCTGCCTACAGTGACAGTTACGGACGAGTTTATGCTGCCGACCCCTACAACCACGCACTTGCTCCAGCAGCCACATACAGCGTTGGTGCCATGAACGCTTTCGCGCCCCTGACCGATGCCAAGACCAGGAGTCACGCGGATGATGTGGGTCTCGTTCTTTCTTCATTGCAGGCTAGTATATACCGAGGTGGATACAGTCGTTTCGCtccatactaaaaaaaaaacaacaacaacaacaacaacaactacaacaacaacaaaagaaaacaaaacctaTTGAAACCTAAACGAGAATCTTCCTGTGGGGTAAAGAGAGAATAATTCAAGAGGCCTGGGTATTGCAATACATGCAGTAGTGCATCATTTTGGCATCTCTTAAGAGAGAGGACAAAAATGGATATTTTTCATCTTATACCTCAGATATTTTGTgctgtgtattttaatattgtgggtttttaatttctaaagaTTACATAGATTGTTGGCTGTAGAGGTTTCTGTGGTGATCTAGAGAGCTGCTAGATTTTAAAAAGAGacgagataaaaaaaaaaaacacattaaagatACAAATTGTTAGGGATTTATCATGTAAATGAATTATTGAATTATGATGTATGATAAATATTAAGTCCCTTGGGGTTATCATATTTTGTAAGAGTGTAAGTGACTACAGTAGTCAAGTGATTTTCTGCTCTTCGTTTTtcgttttctttcattttttttttttaggccttTCGGTTCTTTTTTGgttcttttattaattattattaaatattatattgttattattatttctggGTGTTTTGGGTCACaagtttgtattattattattttattttatttttcgcTTGTGGTTTCCATGCTGGAAGGATAacgagataaagagagagaaaaagaacgaAAGGTAGGACGAacgaaagaaaggaaaagagagaaggaaagattgatacagagttatacagcaAAAAGTGAGTGTAAGACGGCCACACCTCAGGCGTAaagagaaagcgagaaagaatgcaagagagagagagagagaaaaagaaagagaaagagagagagagaggtgggccCGAGGAGAAGCAGCACCCTGAGGGTGGTACAGGGCCGTACGCTACAGAAGGAGAGAAACCACGGAGGCATCGATTCTTTCAGACGTCTGATATCAGTCATCACTCAAAGCCAAAGTTTACGTTCCCAGGATGTTGTTTCGTGTTCGGAATTTTACATAGCGGCTCTTAGATACAGTCCACAAAAACTTCACCACGacagtattttactgtttaccTGTTTATCTAGTTCGTAGATCAGGCCCTTAACTAGTTTATGCCAACCACAAGAAGTTCTTTTTATATTACGGTACTTCCAGTATATTGATTGATATAATTGCTGACTTTTATATTATGGGAGagataaataacttaaaaaataataataataaaaaaaaaataaaaaataaaaaaaaaaaatgcggcGAAAGTAGCGCCGTTTATATTTTTCGTTtcgtttttctttcttcttttttttttcgaaagTAATGAAACTATAATTATTTGTACCagataaaagtgaaaaaaaaaaaaataaatgatgataataattataataataataataataataataaaccaacCGTGTATTAAATTTGATCTGTTCAGTGGAAATGTTCTCTTATACGAAATACACAGCTGTGTAATGTTTTAGATTTAGTGTGGTAGACCAACTGTTAGAGAAAGGTGTCTCATTTTTTATGAAATCATACTCAAGATTTATATCAACACTTTACAAGTAATGCAATCATTATGTAGATATGATCATAGTATTTTTGTCAACTGTACTATTTTGCACACACGACCTGCAGTTTTTTCATCACTTCTCTCAGCTTGTGGGACGTTACATTGTCTgttctttcctctttttttgttgtttgtttcttgtttgtttttatctggttgaatttttttttttttttttttttttttcgtttcgCTTCCTTTTGGTTTTGATATCATTTTTAATGTGACATCCTTTGTATTGTTATTTTCTAGAAACACAGCCTTTACACTTTGAAACTGTTTGATTATCGAGAAACTGAGAAATATAGGAATTGTGAAAAAGATATctatatgtaaatatgaataATGATAAATATGTCATTTACAAGTGCTACACAAACAAGCTGTCGAGGTGTCCTTGAAGAGTCGCAGCTTGTGCTGTGCATACGCGAAGAACTTCCCTACATGTTGTTTACAGTATACCTACTTAGAGGTGTTTGTCACATatctcattttcttcttcttcttttttccttttttgggttatttttttgtatttataaaaaagggttaaaatacataaaatacaagcgaaaaaaaaaaacaacaaaaaaaaaacagcagcttaaATTTATCCAGCTGCAAAAATATCCTcttgtgtactgtgtgtgtgtcctacCACACAACTGGGCAAAAATATCGTATCCACTGCTGTAACTCTGCTATACTTTCTGCTTCCAGTAGGTGTTGTGAACAGGCCTTCTCCTTGTCATTGTATGTGCATGCACTATGATCCGCATAACAGTAACCATCAATAAAGTTTCTCAAGATAA

Function

symbol description
rbfox1 Predicted to enable mRNA binding activity. Acts upstream of or within heart contraction; hypothalamus development; and regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. Is expressed in digestive system; heart; nervous system; neural keel; and skeletal muscle. Orthologous to human RBFOX1 (RNA binding fox-1 homolog 1).

NR:

description
PREDICTED: RNA binding protein fox-1 homolog 1

GO:

id name namespace
GO:0021854 hypothalamus development biological_process
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14946 RBFOX, FOX; RNA binding protein fox-1

RNA

RNA id representative length rna type GC content exon number start site end site
TU19032 False 1507 lncRNA 0.39 4 28564706 28605892
TU19033 False 1560 lncRNA 0.39 5 28564706 28605892
TU19039 False 1880 lncRNA 0.31 2 28598522 28607089
XM_022677983.1 True 3723 mRNA 0.41 12 28112046 28607083

Neighbor

gene id symbol gene type direction distance location
fbxl16 fbxl16,LOC107685932,LOC107738613,LOC107568165,LOC107568127,LOC107690242 coding upstream 269990 27799416 ~ 27842056 (+)
LOC103031039 gsg1l,LOC103031039,LOC108436662,LOC107690243,LOC107738642,LOC107685933 coding upstream 363860 27703214 ~ 27748186 (+)
c2h16orf89 cunh16orf89 coding upstream 508903 27591585 ~ 27603143 (+)
eef2kmt eef2kmt coding upstream 533986 27573552 ~ 27578060 (+)
LOC111194302 NA coding upstream 999978 27104032 ~ 27112068 (+)
mettl22 mettl22 coding downstream 58123 28665212 ~ 28694928 (+)
abat abat,LOC107690246,LOC107738621,LOC107685926 coding downstream 90333 28697422 ~ 28748984 (+)
dnase1 dnase1l2 coding downstream 207029 28814118 ~ 28821841 (+)
LOC103022852 arhgdib,gdir2,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding downstream 221513 28828602 ~ 28890929 (+)
LOC103022544 pde6g,LOC108432842,LOC107733865,LOC107690252 coding downstream 293934 28901023 ~ 28902504 (+)
G14198 NA non-coding upstream 17086 28004284 ~ 28094960 (+)
G14179 NA non-coding upstream 222014 27812962 ~ 27890032 (+)
G14172 NA non-coding upstream 432354 27679425 ~ 27679692 (+)
G14096 NA non-coding upstream 468924 27586935 ~ 27643122 (+)
G14089 NA non-coding upstream 492232 27566514 ~ 27619814 (+)
G14338 NA non-coding downstream 13625 28620714 ~ 28621120 (+)
G14348 NA non-coding downstream 78207 28685296 ~ 28685750 (+)
G14352 NA non-coding downstream 91175 28698264 ~ 28699214 (+)
G14346 NA non-coding downstream 100207 28707296 ~ 28802417 (+)
G14353 NA non-coding downstream 116303 28723392 ~ 28724706 (+)
LOC103031366 LOC105899914 other upstream 34228 28050129 ~ 28077818 (+)
G14047 NA other upstream 1071517 27009548 ~ 27040529 (+)
LOC103023549 gpr171 other upstream 2316962 25788584 ~ 25795084 (+)
mfrp mfrp other upstream 2438810 25660898 ~ 25673236 (+)
LOC103045399 LOC108426937,LOC108277812 other upstream 2469303 25561633 ~ 25642743 (+)
G14444 NA other downstream 521978 29129067 ~ 29129373 (+)
G14480 NA other downstream 788071 29395160 ~ 29398166 (+)
nubp1 nubp1,LOC107690260,LOC107685912 other downstream 1067021 29674110 ~ 29720592 (+)
G14505 NA other downstream 1126216 29733305 ~ 29742723 (+)
G14638 rps15a,MGC114789,RPS15A,LOC107686992 other downstream 1653588 30260677 ~ 30268382 (+)

Expression


Co-expression Network